Mercurial > repos > bgruening > sklearn_ensemble
comparison ensemble.xml @ 12:a78f96f64939 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit cd4a8b019168acd5a513c57a1b1f380622f230f6
| author | bgruening |
|---|---|
| date | Sun, 01 Jul 2018 03:19:54 -0400 |
| parents | f4d8a82e167c |
| children | 6352834b1c99 |
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| 11:f4d8a82e167c | 12:a78f96f64939 |
|---|---|
| 48 options["min_samples_split"] = int(options["min_samples_split"]) | 48 options["min_samples_split"] = int(options["min_samples_split"]) |
| 49 input_type = params["selected_tasks"]["selected_algorithms"]["input_options"]["selected_input"] | 49 input_type = params["selected_tasks"]["selected_algorithms"]["input_options"]["selected_input"] |
| 50 if input_type=="tabular": | 50 if input_type=="tabular": |
| 51 header = 'infer' if params["selected_tasks"]["selected_algorithms"]["input_options"]["header1"] else None | 51 header = 'infer' if params["selected_tasks"]["selected_algorithms"]["input_options"]["header1"] else None |
| 52 column_option = params["selected_tasks"]["selected_algorithms"]["input_options"]["column_selector_options_1"]["selected_column_selector_option"] | 52 column_option = params["selected_tasks"]["selected_algorithms"]["input_options"]["column_selector_options_1"]["selected_column_selector_option"] |
| 53 if column_option in ["by_index_number", "all_but_by_index_number"]: | 53 if column_option in ["by_index_number", "all_but_by_index_number", "by_header_name", "all_but_by_header_name"]: |
| 54 c = params["selected_tasks"]["selected_algorithms"]["input_options"]["column_selector_options_1"]["col1"] | 54 c = params["selected_tasks"]["selected_algorithms"]["input_options"]["column_selector_options_1"]["col1"] |
| 55 else: | 55 else: |
| 56 c = None | 56 c = None |
| 57 X = read_columns( | 57 X = read_columns( |
| 58 "$selected_tasks.selected_algorithms.input_options.infile1", | 58 "$selected_tasks.selected_algorithms.input_options.infile1", |
| 65 else: | 65 else: |
| 66 X = mmread(open("$selected_tasks.selected_algorithms.input_options.infile1", 'r')) | 66 X = mmread(open("$selected_tasks.selected_algorithms.input_options.infile1", 'r')) |
| 67 | 67 |
| 68 header = 'infer' if params["selected_tasks"]["selected_algorithms"]["input_options"]["header2"] else None | 68 header = 'infer' if params["selected_tasks"]["selected_algorithms"]["input_options"]["header2"] else None |
| 69 column_option = params["selected_tasks"]["selected_algorithms"]["input_options"]["column_selector_options_2"]["selected_column_selector_option2"] | 69 column_option = params["selected_tasks"]["selected_algorithms"]["input_options"]["column_selector_options_2"]["selected_column_selector_option2"] |
| 70 if column_option in ["by_index_number", "all_but_by_index_number"]: | 70 if column_option in ["by_index_number", "all_but_by_index_number", "by_header_name", "all_but_by_header_name"]: |
| 71 c = params["selected_tasks"]["selected_algorithms"]["input_options"]["column_selector_options_2"]["col2"] | 71 c = params["selected_tasks"]["selected_algorithms"]["input_options"]["column_selector_options_2"]["col2"] |
| 72 else: | 72 else: |
| 73 c = None | 73 c = None |
| 74 y = read_columns( | 74 y = read_columns( |
| 75 "$selected_tasks.selected_algorithms.input_options.infile2", | 75 "$selected_tasks.selected_algorithms.input_options.infile2", |