Mercurial > repos > bgruening > sklearn_ensemble
diff ensemble.xml @ 24:e94395c672bd draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
author | bgruening |
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date | Tue, 14 May 2019 18:15:12 -0400 |
parents | 39ae276e75d9 |
children | dde0f1654d18 |
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--- a/ensemble.xml Sun Dec 30 01:56:11 2018 -0500 +++ b/ensemble.xml Tue May 14 18:15:12 2019 -0400 @@ -14,17 +14,18 @@ <inputs name="inputs"/> <configfile name="ensemble_script"> <![CDATA[ -import sys -import os import json import numpy as np +import pandas +import pickle +from scipy.io import mmread import sklearn.ensemble -import pandas -from scipy.io import mmread +import sys -with open("$__tool_directory__/sk_whitelist.json", "r") as f: - sk_whitelist = json.load(f) -exec(open("$__tool_directory__/utils.py").read(), globals()) +sys.path.insert(0, '$__tool_directory__') +from utils import load_model, get_X_y + +N_JOBS = int(__import__('os').environ.get('GALAXY_SLOTS', 1)) # Get inputs, outputs. input_json_path = sys.argv[1]