Mercurial > repos > bgruening > sklearn_feature_selection

diff feature_selection.xml @ 9:537c6763c018 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
author: bgruening
date: Fri, 13 Jul 2018 03:55:31 -0400
parents: b0d554b38770
children: 96f9b73327f2
--- a/feature_selection.xml	Tue Jul 10 03:11:48 2018 -0400
+++ b/feature_selection.xml	Fri Jul 13 03:55:31 2018 -0400
@@ -28,7 +28,8 @@
 @FEATURE_SELECTOR_FUNCTION@
 
 input_json_path = sys.argv[1]
-params = json.load(open(input_json_path, "r"))
+with open(input_json_path, "r") as param_handler:
+    params = json.load(param_handler)
 
 ## Read features
 features_has_header = params["input_options"]["header1"]
@@ -50,7 +51,7 @@
             parse_dates=True
     )
 else:
-    X = mmread(open("$input_options.infile1", 'r'))
+    X = mmread("$input_options.infile1")
 
 ## Read labels
 header = 'infer' if params["input_options"]["header2"] else None