Mercurial > repos > bgruening > sklearn_generalized_linear

comparison generalized_linear.xml @ 10:44699d79d908 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
author bgruening
date Tue, 05 Jun 2018 06:47:46 -0400
parents fd6c50f21cd0
children 6cf4b82c72bc
comparison
equal deleted inserted replaced
9:717ab7f22435 10:44699d79d908
32 algorithm = params["selected_tasks"]["selected_algorithms"]["selected_algorithm"] 32 algorithm = params["selected_tasks"]["selected_algorithms"]["selected_algorithm"]
33 options = params["selected_tasks"]["selected_algorithms"]["options"] 33 options = params["selected_tasks"]["selected_algorithms"]["options"]
34 34
35 #if $selected_tasks.selected_algorithms.input_options.selected_input=="tabular": 35 #if $selected_tasks.selected_algorithms.input_options.selected_input=="tabular":
36 header = 'infer' if params["selected_tasks"]["selected_algorithms"]["input_options"]["header1"] else None 36 header = 'infer' if params["selected_tasks"]["selected_algorithms"]["input_options"]["header1"] else None
37 column_option = params["selected_tasks"]["selected_algorithms"]["input_options"]["column_selector_options_1"]["selected_column_selector_option"]
38 if column_option == "by_index_number":
39 c = params["selected_tasks"]["selected_algorithms"]["input_options"]["column_selector_options_1"]["col1"]
40 else:
41 c = None
37 X = read_columns( 42 X = read_columns(
38 "$selected_tasks.selected_algorithms.input_options.infile1", 43 "$selected_tasks.selected_algorithms.input_options.infile1",
39 "$selected_tasks.selected_algorithms.input_options.col1", 44 c = c,
45 c_option = column_option,
40 sep='\t', 46 sep='\t',
41 header=header, 47 header=header,
42 parse_dates=True 48 parse_dates=True
43 ) 49 )
44 #else: 50 #else:
45 X = mmread(open("$selected_tasks.selected_algorithms.input_options.infile1", 'r')) 51 X = mmread(open("$selected_tasks.selected_algorithms.input_options.infile1", 'r'))
46 #end if 52 #end if
47 53
48 header = 'infer' if params["selected_tasks"]["selected_algorithms"]["input_options"]["header2"] else None 54 header = 'infer' if params["selected_tasks"]["selected_algorithms"]["input_options"]["header2"] else None
55 column_option = params["selected_tasks"]["selected_algorithms"]["input_options"]["column_selector_options_2"]["selected_column_selector_option2"]
56 if column_option == "by_index_number":
57 c = params["selected_tasks"]["selected_algorithms"]["input_options"]["column_selector_options_2"]["col2"]
58 else:
59 c = None
49 y = read_columns( 60 y = read_columns(
50 "$selected_tasks.selected_algorithms.input_options.infile2", 61 "$selected_tasks.selected_algorithms.input_options.infile2",
51 "$selected_tasks.selected_algorithms.input_options.col2", 62 c = c,
63 c_option = column_option,
52 sep='\t', 64 sep='\t',
53 header=header, 65 header=header,
54 parse_dates=True 66 parse_dates=True
55 ) 67 )
56 68