comparison generalized_linear.xml @ 23:e3bc646e63b2 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 57f4407e278a615f47a377a3328782b1d8e0b54d

22:e0f8931f6149

            <param name="col1" value="6"/>
            <param name="col2" value="6"/>
            <param name="selected_task" value="train"/>
            <param name="selected_algorithm" value="SGDRegressor"/>
            <param name="random_state" value="10"/>
            <output name="outfile_fit" file="glm_model01" compare="sim_size" delta="500"/>
        </test>
        <test>
            <param name="infile_model" value="glm_model01" ftype="zip"/>
            <param name="infile_data" value="regression_test.tabular" ftype="tabular"/>
            <param name="selected_task" value="load"/>
            <output name="outfile_predict" file="glm_result01" compare="sim_size" delta="500"/>
        </test>
        <test>
            <param name="infile1" value="train.tabular" ftype="tabular"/>
            <param name="infile2" value="train.tabular" ftype="tabular"/>
            <param name="col1" value="1,2,3,4"/>
            <param name="col2" value="5"/>
            <param name="selected_task" value="train"/>
            <param name="selected_algorithm" value="SGDClassifier"/>
            <param name="random_state" value="10"/>
            <output name="outfile_fit" file="glm_model02" compare="sim_size" delta="500"/>
        </test>
        <test>
            <param name="infile_model" value="glm_model02" ftype="zip"/>
            <param name="infile_data" value="test.tabular" ftype="tabular"/>
            <param name="selected_task" value="load"/>

            <param name="col1" value="1,2,3,4"/>
            <param name="col2" value="5"/>
            <param name="selected_task" value="train"/>
            <param name="selected_algorithm" value="RidgeClassifier"/>
            <param name="random_state" value="10"/>
            <output name="outfile_fit" file="glm_model03" compare="sim_size" delta="500"/>
        </test>
        <test>
            <param name="infile_model" value="glm_model03" ftype="zip"/>
            <param name="infile_data" value="test.tabular" ftype="tabular"/>
            <param name="selected_task" value="load"/>

            <param name="infile2" value="regression_train.tabular" ftype="tabular"/>
            <param name="col1" value="1,2,3,4,5"/>
            <param name="col2" value="6"/>
            <param name="selected_task" value="train"/>
            <param name="selected_algorithm" value="LinearRegression"/>
            <output name="outfile_fit" file="glm_model04" compare="sim_size" delta="500"/>
        </test>
        <test>
            <param name="infile_model" value="glm_model04" ftype="zip"/>
            <param name="infile_data" value="regression_test.tabular" ftype="tabular"/>
            <param name="selected_task" value="load"/>
            <output name="outfile_predict" file="glm_result04" compare="sim_size"/>
        </test>
        <test>
            <param name="infile1" value="train.tabular" ftype="tabular"/>
            <param name="infile2" value="train.tabular" ftype="tabular"/>
            <param name="col1" value="1,2,3,4"/>
            <param name="col2" value="5"/>
            <param name="selected_task" value="train"/>
            <param name="selected_algorithm" value="LogisticRegression"/>
            <param name="random_state" value="10"/>
            <output name="outfile_fit" file="glm_model05" compare="sim_size" delta="500"/>
        </test>
        <test>
            <param name="infile_model" value="glm_model05" ftype="zip"/>
            <param name="infile_data" value="test.tabular" ftype="tabular"/>
            <param name="selected_task" value="load"/>

            <param name="col1" value="1,2,3,4"/>
            <param name="col2" value="5"/>
            <param name="selected_task" value="train"/>
            <param name="selected_algorithm" value="LogisticRegressionCV"/>
            <param name="random_state" value="10"/>
            <output name="outfile_fit" file="glm_model06" compare="sim_size" delta="500"/>
        </test>
        <test>
            <param name="infile_model" value="glm_model06" ftype="zip"/>
            <param name="infile_data" value="test.tabular" ftype="tabular"/>
            <param name="selected_task" value="load"/>

            <param name="col1" value="1,2,3,4,5"/>
            <param name="col2" value="6"/>
            <param name="selected_task" value="train"/>
            <param name="selected_algorithm" value="Ridge"/>
            <param name="random_state" value="10"/>
            <output name="outfile_fit" file="glm_model07" compare="sim_size" delta="500"/>
        </test>
        <test>
            <param name="infile_model" value="glm_model07" ftype="zip"/>
            <param name="infile_data" value="regression_test.tabular" ftype="tabular"/>
            <param name="selected_task" value="load"/>
            <output name="outfile_predict" file="glm_result07" compare="sim_size"/>
        </test>
        <test>
            <param name="infile1" value="train.tabular" ftype="tabular"/>
            <param name="infile2" value="train.tabular" ftype="tabular"/>
            <param name="col1" value="1,2,3,4"/>
            <param name="col2" value="5"/>
            <param name="selected_task" value="train"/>
            <param name="selected_algorithm" value="Perceptron"/>
            <param name="random_state" value="10"/>
            <output name="outfile_fit" file="glm_model08" compare="sim_size" delta="500"/>
        </test>
        <test>
            <param name="infile_model" value="glm_model08" ftype="zip"/>
            <param name="infile_data" value="test.tabular" ftype="tabular"/>
            <param name="selected_task" value="load"/>

23:e3bc646e63b2

            <param name="col1" value="6"/>
            <param name="col2" value="6"/>
            <param name="selected_task" value="train"/>
            <param name="selected_algorithm" value="SGDRegressor"/>
            <param name="random_state" value="10"/>
            <output name="outfile_fit" file="glm_model01" compare="sim_size" delta="5"/>
        </test>
        <test>
            <param name="infile_model" value="glm_model01" ftype="zip"/>
            <param name="infile_data" value="regression_test.tabular" ftype="tabular"/>
            <param name="selected_task" value="load"/>
            <output name="outfile_predict" file="glm_result01" lines_diff="4"/>
        </test>
        <test>
            <param name="infile1" value="train.tabular" ftype="tabular"/>
            <param name="infile2" value="train.tabular" ftype="tabular"/>
            <param name="col1" value="1,2,3,4"/>
            <param name="col2" value="5"/>
            <param name="selected_task" value="train"/>
            <param name="selected_algorithm" value="SGDClassifier"/>
            <param name="random_state" value="10"/>
            <output name="outfile_fit" file="glm_model02" compare="sim_size" delta="5"/>
        </test>
        <test>
            <param name="infile_model" value="glm_model02" ftype="zip"/>
            <param name="infile_data" value="test.tabular" ftype="tabular"/>
            <param name="selected_task" value="load"/>

            <param name="col1" value="1,2,3,4"/>
            <param name="col2" value="5"/>
            <param name="selected_task" value="train"/>
            <param name="selected_algorithm" value="RidgeClassifier"/>
            <param name="random_state" value="10"/>
            <output name="outfile_fit" file="glm_model03" compare="sim_size" delta="5"/>
        </test>
        <test>
            <param name="infile_model" value="glm_model03" ftype="zip"/>
            <param name="infile_data" value="test.tabular" ftype="tabular"/>
            <param name="selected_task" value="load"/>

            <param name="infile2" value="regression_train.tabular" ftype="tabular"/>
            <param name="col1" value="1,2,3,4,5"/>
            <param name="col2" value="6"/>
            <param name="selected_task" value="train"/>
            <param name="selected_algorithm" value="LinearRegression"/>
            <output name="outfile_fit" file="glm_model04" compare="sim_size" delta="5"/>
        </test>
        <test>
            <param name="infile_model" value="glm_model04" ftype="zip"/>
            <param name="infile_data" value="regression_test.tabular" ftype="tabular"/>
            <param name="selected_task" value="load"/>
            <output name="outfile_predict" file="glm_result04" lines_diff="8"/>
        </test>
        <test>
            <param name="infile1" value="train.tabular" ftype="tabular"/>
            <param name="infile2" value="train.tabular" ftype="tabular"/>
            <param name="col1" value="1,2,3,4"/>
            <param name="col2" value="5"/>
            <param name="selected_task" value="train"/>
            <param name="selected_algorithm" value="LogisticRegression"/>
            <param name="random_state" value="10"/>
            <output name="outfile_fit" file="glm_model05" compare="sim_size" delta="5"/>
        </test>
        <test>
            <param name="infile_model" value="glm_model05" ftype="zip"/>
            <param name="infile_data" value="test.tabular" ftype="tabular"/>
            <param name="selected_task" value="load"/>

            <param name="col1" value="1,2,3,4"/>
            <param name="col2" value="5"/>
            <param name="selected_task" value="train"/>
            <param name="selected_algorithm" value="LogisticRegressionCV"/>
            <param name="random_state" value="10"/>
            <output name="outfile_fit" file="glm_model06" compare="sim_size" delta="5"/>
        </test>
        <test>
            <param name="infile_model" value="glm_model06" ftype="zip"/>
            <param name="infile_data" value="test.tabular" ftype="tabular"/>
            <param name="selected_task" value="load"/>

            <param name="col1" value="1,2,3,4,5"/>
            <param name="col2" value="6"/>
            <param name="selected_task" value="train"/>
            <param name="selected_algorithm" value="Ridge"/>
            <param name="random_state" value="10"/>
            <output name="outfile_fit" file="glm_model07" compare="sim_size" delta="5"/>
        </test>
        <test>
            <param name="infile_model" value="glm_model07" ftype="zip"/>
            <param name="infile_data" value="regression_test.tabular" ftype="tabular"/>
            <param name="selected_task" value="load"/>
            <output name="outfile_predict" file="glm_result07"/>
        </test>
        <test>
            <param name="infile1" value="train.tabular" ftype="tabular"/>
            <param name="infile2" value="train.tabular" ftype="tabular"/>
            <param name="col1" value="1,2,3,4"/>
            <param name="col2" value="5"/>
            <param name="selected_task" value="train"/>
            <param name="selected_algorithm" value="Perceptron"/>
            <param name="random_state" value="10"/>
            <output name="outfile_fit" file="glm_model08" compare="sim_size" delta="5"/>
        </test>
        <test>
            <param name="infile_model" value="glm_model08" ftype="zip"/>
            <param name="infile_data" value="test.tabular" ftype="tabular"/>
            <param name="selected_task" value="load"/>