# HG changeset patch # User bgruening # Date 1531161232 14400 # Node ID 8518fdc23c7e13dcf3c5eff2fb6c790ea1a33a2f # Parent 510aa2ce035e7ea50389009a202ff21e5b2d0607 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5d71c93a3dd804b1469852240a86021ab9130364 diff -r 510aa2ce035e -r 8518fdc23c7e main_macros.xml --- a/main_macros.xml Sun Jul 01 03:21:23 2018 -0400 +++ b/main_macros.xml Mon Jul 09 14:33:52 2018 -0400 @@ -64,6 +64,45 @@ return new_selector + +def get_X_y(params, file1, file2): + input_type = params["selected_tasks"]["selected_algorithms"]["input_options"]["selected_input"] + if input_type=="tabular": + header = 'infer' if params["selected_tasks"]["selected_algorithms"]["input_options"]["header1"] else None + column_option = params["selected_tasks"]["selected_algorithms"]["input_options"]["column_selector_options_1"]["selected_column_selector_option"] + if column_option in ["by_index_number", "all_but_by_index_number", "by_header_name", "all_but_by_header_name"]: + c = params["selected_tasks"]["selected_algorithms"]["input_options"]["column_selector_options_1"]["col1"] + else: + c = None + X = read_columns( + file1, + c = c, + c_option = column_option, + sep='\t', + header=header, + parse_dates=True + ) + else: + X = mmread(open(file1, 'r')) + + header = 'infer' if params["selected_tasks"]["selected_algorithms"]["input_options"]["header2"] else None + column_option = params["selected_tasks"]["selected_algorithms"]["input_options"]["column_selector_options_2"]["selected_column_selector_option2"] + if column_option in ["by_index_number", "all_but_by_index_number", "by_header_name", "all_but_by_header_name"]: + c = params["selected_tasks"]["selected_algorithms"]["input_options"]["column_selector_options_2"]["col2"] + else: + c = None + y = read_columns( + file2, + c = c, + c_option = column_option, + sep='\t', + header=header, + parse_dates=True + ) + y=y.ravel() + return X, y + + python @@ -81,34 +120,6 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - -