Mercurial > repos > bgruening > sklearn_numeric_clustering
comparison numeric_clustering.xml @ 19:6ba8d7af7e7a draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d00173591e4a783a4c1cb2664e4bb192ab5414f7
| author | bgruening | 
|---|---|
| date | Fri, 17 Aug 2018 12:28:07 -0400 | 
| parents | f02f05990cc9 | 
| children | 1d6d938e7ee2 | 
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| 18:5d98b35a807e | 19:6ba8d7af7e7a | 
|---|---|
| 14 <inputs name="inputs"/> | 14 <inputs name="inputs"/> | 
| 15 <configfile name="cluster_script"> | 15 <configfile name="cluster_script"> | 
| 16 <![CDATA[ | 16 <![CDATA[ | 
| 17 import sys | 17 import sys | 
| 18 import json | 18 import json | 
| 19 import numpy as np | |
| 20 import sklearn.cluster | 19 import sklearn.cluster | 
| 21 import pandas | 20 import pandas | 
| 22 from sklearn import metrics | 21 from sklearn import metrics | 
| 23 from scipy.io import mmread | 22 from scipy.io import mmread | 
| 24 | 23 | 
| 25 @COLUMNS_FUNCTION@ | 24 execfile("$__tool_directory__/utils.py") | 
| 26 | 25 | 
| 27 input_json_path = sys.argv[1] | 26 input_json_path = sys.argv[1] | 
| 28 with open(input_json_path, "r") as param_handler: | 27 with open(input_json_path, "r") as param_handler: | 
| 29 params = json.load(param_handler) | 28 params = json.load(param_handler) | 
| 30 | 29 | 
