Mercurial > repos > bgruening > sklearn_sample_generator
annotate main_macros.xml @ 16:18ac21927d3d draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
author | bgruening |
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date | Sat, 04 Aug 2018 12:33:33 -0400 |
parents | c02c2bf137ab |
children | dec54aaefc8c |
rev | line source |
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0
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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1 <macros> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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2 <token name="@VERSION@">0.9</token> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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3 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
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4 <token name="@COLUMNS_FUNCTION@"> |
10
badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
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5 def read_columns(f, c=None, c_option='by_index_number', return_df=False, **args): |
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8b2620209553
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 641ac64ded23fbb6fe85d5f13926da12dcce4e76
bgruening
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6 data = pandas.read_csv(f, **args) |
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badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
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7 if c_option == 'by_index_number': |
badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
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8 cols = list(map(lambda x: x - 1, c)) |
badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
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9 data = data.iloc[:,cols] |
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0ba38603a0d6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 64158f357e708f0b60d2669d92d614f7aee34c0e
bgruening
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10 if c_option == 'all_but_by_index_number': |
0ba38603a0d6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 64158f357e708f0b60d2669d92d614f7aee34c0e
bgruening
parents:
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11 cols = list(map(lambda x: x - 1, c)) |
0ba38603a0d6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 64158f357e708f0b60d2669d92d614f7aee34c0e
bgruening
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12 data.drop(data.columns[cols], axis=1, inplace=True) |
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d1ba2cc428e3
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit cd4a8b019168acd5a513c57a1b1f380622f230f6
bgruening
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13 if c_option == 'by_header_name': |
d1ba2cc428e3
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit cd4a8b019168acd5a513c57a1b1f380622f230f6
bgruening
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14 cols = [e.strip() for e in c.split(',')] |
d1ba2cc428e3
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit cd4a8b019168acd5a513c57a1b1f380622f230f6
bgruening
parents:
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15 data = data[cols] |
d1ba2cc428e3
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit cd4a8b019168acd5a513c57a1b1f380622f230f6
bgruening
parents:
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16 if c_option == 'all_but_by_header_name': |
d1ba2cc428e3
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit cd4a8b019168acd5a513c57a1b1f380622f230f6
bgruening
parents:
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17 cols = [e.strip() for e in c.split(',')] |
d1ba2cc428e3
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit cd4a8b019168acd5a513c57a1b1f380622f230f6
bgruening
parents:
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18 data.drop(cols, axis=1, inplace=True) |
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9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
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19 y = data.values |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
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20 if return_df: |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
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21 return y, data |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
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22 else: |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
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23 return y |
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dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
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24 return y |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
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25 </token> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
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26 |
9
049c8e817869
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978
bgruening
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27 ## generate an instance for one of sklearn.feature_selection classes |
049c8e817869
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978
bgruening
parents:
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diff
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28 <token name="@FEATURE_SELECTOR_FUNCTION@"> |
049c8e817869
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978
bgruening
parents:
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29 def feature_selector(inputs): |
049c8e817869
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978
bgruening
parents:
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30 selector = inputs["selected_algorithm"] |
049c8e817869
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978
bgruening
parents:
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31 selector = getattr(sklearn.feature_selection, selector) |
049c8e817869
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978
bgruening
parents:
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diff
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32 options = inputs["options"] |
049c8e817869
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978
bgruening
parents:
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33 |
049c8e817869
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978
bgruening
parents:
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34 if inputs['selected_algorithm'] == 'SelectFromModel': |
049c8e817869
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978
bgruening
parents:
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35 if not options['threshold'] or options['threshold'] == 'None': |
049c8e817869
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978
bgruening
parents:
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diff
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36 options['threshold'] = None |
16
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
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37 if inputs['model_inputter']['input_mode'] == 'prefitted': |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
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38 model_file = inputs['model_inputter']['fitted_estimator'] |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
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39 with open(model_file, 'rb') as model_handler: |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
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40 fitted_estimator = pickle.load(model_handler) |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
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41 new_selector = selector(fitted_estimator, prefit=True, **options) |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
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42 else: |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
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43 estimator_json = inputs['model_inputter']["estimator_selector"] |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
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44 estimator = get_estimator(estimator_json) |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
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45 new_selector = selector(estimator, **options) |
9
049c8e817869
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978
bgruening
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46 |
049c8e817869
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978
bgruening
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47 elif inputs['selected_algorithm'] in ['RFE', 'RFECV']: |
049c8e817869
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978
bgruening
parents:
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48 if 'scoring' in options and (not options['scoring'] or options['scoring'] == 'None'): |
049c8e817869
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978
bgruening
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49 options['scoring'] = None |
16
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
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50 estimator=get_estimator(inputs["estimator_selector"]) |
9
049c8e817869
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978
bgruening
parents:
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51 new_selector = selector(estimator, **options) |
049c8e817869
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978
bgruening
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52 |
049c8e817869
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978
bgruening
parents:
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53 elif inputs['selected_algorithm'] == "VarianceThreshold": |
049c8e817869
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978
bgruening
parents:
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54 new_selector = selector(**options) |
049c8e817869
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978
bgruening
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55 |
049c8e817869
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978
bgruening
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56 else: |
049c8e817869
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978
bgruening
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57 score_func = inputs["score_func"] |
049c8e817869
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978
bgruening
parents:
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diff
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58 score_func = getattr(sklearn.feature_selection, score_func) |
049c8e817869
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978
bgruening
parents:
8
diff
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59 new_selector = selector(score_func, **options) |
049c8e817869
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978
bgruening
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60 |
049c8e817869
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978
bgruening
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61 return new_selector |
049c8e817869
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978
bgruening
parents:
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62 </token> |
049c8e817869
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978
bgruening
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63 |
13
267450c56c42
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5d71c93a3dd804b1469852240a86021ab9130364
bgruening
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64 <token name="@GET_X_y_FUNCTION@"> |
267450c56c42
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5d71c93a3dd804b1469852240a86021ab9130364
bgruening
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65 def get_X_y(params, file1, file2): |
267450c56c42
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5d71c93a3dd804b1469852240a86021ab9130364
bgruening
parents:
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66 input_type = params["selected_tasks"]["selected_algorithms"]["input_options"]["selected_input"] |
267450c56c42
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5d71c93a3dd804b1469852240a86021ab9130364
bgruening
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67 if input_type=="tabular": |
267450c56c42
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5d71c93a3dd804b1469852240a86021ab9130364
bgruening
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68 header = 'infer' if params["selected_tasks"]["selected_algorithms"]["input_options"]["header1"] else None |
267450c56c42
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5d71c93a3dd804b1469852240a86021ab9130364
bgruening
parents:
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69 column_option = params["selected_tasks"]["selected_algorithms"]["input_options"]["column_selector_options_1"]["selected_column_selector_option"] |
267450c56c42
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5d71c93a3dd804b1469852240a86021ab9130364
bgruening
parents:
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70 if column_option in ["by_index_number", "all_but_by_index_number", "by_header_name", "all_but_by_header_name"]: |
267450c56c42
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5d71c93a3dd804b1469852240a86021ab9130364
bgruening
parents:
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71 c = params["selected_tasks"]["selected_algorithms"]["input_options"]["column_selector_options_1"]["col1"] |
267450c56c42
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5d71c93a3dd804b1469852240a86021ab9130364
bgruening
parents:
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72 else: |
267450c56c42
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5d71c93a3dd804b1469852240a86021ab9130364
bgruening
parents:
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73 c = None |
267450c56c42
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5d71c93a3dd804b1469852240a86021ab9130364
bgruening
parents:
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74 X = read_columns( |
267450c56c42
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5d71c93a3dd804b1469852240a86021ab9130364
bgruening
parents:
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75 file1, |
267450c56c42
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5d71c93a3dd804b1469852240a86021ab9130364
bgruening
parents:
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76 c = c, |
267450c56c42
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5d71c93a3dd804b1469852240a86021ab9130364
bgruening
parents:
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77 c_option = column_option, |
267450c56c42
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5d71c93a3dd804b1469852240a86021ab9130364
bgruening
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78 sep='\t', |
267450c56c42
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5d71c93a3dd804b1469852240a86021ab9130364
bgruening
parents:
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79 header=header, |
267450c56c42
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5d71c93a3dd804b1469852240a86021ab9130364
bgruening
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80 parse_dates=True |
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81 ) |
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82 else: |
15
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83 X = mmread(file1) |
13
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84 |
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85 header = 'infer' if params["selected_tasks"]["selected_algorithms"]["input_options"]["header2"] else None |
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86 column_option = params["selected_tasks"]["selected_algorithms"]["input_options"]["column_selector_options_2"]["selected_column_selector_option2"] |
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87 if column_option in ["by_index_number", "all_but_by_index_number", "by_header_name", "all_but_by_header_name"]: |
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88 c = params["selected_tasks"]["selected_algorithms"]["input_options"]["column_selector_options_2"]["col2"] |
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89 else: |
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90 c = None |
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91 y = read_columns( |
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92 file2, |
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93 c = c, |
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94 c_option = column_option, |
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95 sep='\t', |
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96 header=header, |
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97 parse_dates=True |
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98 ) |
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99 y=y.ravel() |
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100 return X, y |
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101 </token> |
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102 |
16
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103 <token name="@GET_SEARCH_PARAMS_FUNCTION@"> |
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104 def get_search_params(params_builder): |
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105 search_params = {} |
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106 |
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107 def safe_eval(literal): |
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108 |
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109 FROM_SCIPY_STATS = [ 'bernoulli', 'binom', 'boltzmann', 'dlaplace', 'geom', 'hypergeom', |
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110 'logser', 'nbinom', 'planck', 'poisson', 'randint', 'skellam', 'zipf' ] |
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111 |
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112 FROM_NUMPY_RANDOM = [ 'beta', 'binomial', 'bytes', 'chisquare', 'choice', 'dirichlet', 'division', |
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113 'exponential', 'f', 'gamma', 'geometric', 'gumbel', 'hypergeometric', |
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114 'laplace', 'logistic', 'lognormal', 'logseries', 'mtrand', 'multinomial', |
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115 'multivariate_normal', 'negative_binomial', 'noncentral_chisquare', 'noncentral_f', |
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116 'normal', 'pareto', 'permutation', 'poisson', 'power', 'rand', 'randint', |
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117 'randn', 'random', 'random_integers', 'random_sample', 'ranf', 'rayleigh', |
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118 'sample', 'seed', 'set_state', 'shuffle', 'standard_cauchy', 'standard_exponential', |
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119 'standard_gamma', 'standard_normal', 'standard_t', 'triangular', 'uniform', |
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120 'vonmises', 'wald', 'weibull', 'zipf' ] |
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121 |
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122 # File opening and other unneeded functions could be dropped |
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123 UNWANTED = ['open', 'type', 'dir', 'id', 'str', 'repr'] |
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124 |
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125 # Allowed symbol table. Add more if needed. |
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126 new_syms = { |
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127 'np_arange': getattr(np, 'arange'), |
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128 'ensemble_ExtraTreesClassifier': getattr(ensemble, 'ExtraTreesClassifier') |
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129 } |
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130 |
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131 syms = make_symbol_table(use_numpy=False, **new_syms) |
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132 |
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133 for method in FROM_SCIPY_STATS: |
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134 syms['scipy_stats_' + method] = getattr(scipy.stats, method) |
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135 |
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136 for func in FROM_NUMPY_RANDOM: |
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137 syms['np_random_' + func] = getattr(np.random, func) |
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138 |
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139 for key in UNWANTED: |
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140 syms.pop(key, None) |
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141 |
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142 aeval = Interpreter(symtable=syms, use_numpy=False, minimal=False, |
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143 no_if=True, no_for=True, no_while=True, no_try=True, |
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144 no_functiondef=True, no_ifexp=True, no_listcomp=False, |
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145 no_augassign=False, no_assert=True, no_delete=True, |
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146 no_raise=True, no_print=True) |
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147 |
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148 return aeval(literal) |
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149 |
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150 for p in params_builder['param_set']: |
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151 search_p = p['search_param_selector']['search_p'] |
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152 if search_p.strip() == '': |
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153 continue |
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154 param_type = p['search_param_selector']['selected_param_type'] |
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155 |
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156 lst = search_p.split(":") |
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157 assert (len(lst) == 2), "Error, make sure there is one and only one colon in search parameter input." |
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158 literal = lst[1].strip() |
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159 ev = safe_eval(literal) |
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160 if param_type == "final_estimator_p": |
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161 search_params["estimator__" + lst[0].strip()] = ev |
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162 else: |
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163 search_params["preprocessing_" + param_type[5:6] + "__" + lst[0].strip()] = ev |
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164 |
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165 return search_params |
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166 </token> |
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167 |
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168 <token name="@GET_ESTIMATOR_FUNCTION@"> |
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169 def get_estimator(estimator_json): |
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170 estimator_module = estimator_json['selected_module'] |
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171 estimator_cls = estimator_json['selected_estimator'] |
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172 |
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173 if estimator_module == "xgboost": |
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174 cls = getattr(xgboost, estimator_cls) |
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175 else: |
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176 module = getattr(sklearn, estimator_module) |
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177 cls = getattr(module, estimator_cls) |
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178 |
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179 estimator = cls() |
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180 |
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181 estimator_params = estimator_json['text_params'].strip() |
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182 if estimator_params != "": |
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183 try: |
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184 params = ast.literal_eval('{' + estimator_params + '}') |
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185 except ValueError: |
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186 sys.exit("Unsupported parameter input: `%s`" %estimator_params) |
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187 estimator.set_params(**params) |
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188 |
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189 return estimator |
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190 </token> |
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191 |
0
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192 <xml name="python_requirements"> |
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193 <requirements> |
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194 <requirement type="package" version="2.7">python</requirement> |
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195 <requirement type="package" version="0.19.1">scikit-learn</requirement> |
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196 <requirement type="package" version="0.22.0">pandas</requirement> |
16
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197 <requirement type="package" version="0.72.1">xgboost</requirement> |
0
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198 <yield /> |
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199 </requirements> |
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200 </xml> |
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201 |
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202 <xml name="macro_stdio"> |
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203 <stdio> |
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204 <exit_code range="1:" level="fatal" description="Error occurred. Please check Tool Standard Error"/> |
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205 </stdio> |
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206 </xml> |
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207 |
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208 |
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209 <!--Generic interface--> |
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210 |
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211 <xml name="sl_Conditional" token_train="tabular" token_data="tabular" token_model="txt"> |
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212 <conditional name="selected_tasks"> |
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213 <param name="selected_task" type="select" label="Select a Classification Task"> |
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214 <option value="train" selected="true">Train a model</option> |
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215 <option value="load">Load a model and predict</option> |
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216 </param> |
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217 <when value="load"> |
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218 <param name="infile_model" type="data" format="@MODEL@" label="Models" help="Select a model file."/> |
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219 <param name="infile_data" type="data" format="@DATA@" label="Data (tabular)" help="Select the dataset you want to classify."/> |
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220 <param name="header" type="boolean" optional="True" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" /> |
0
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221 <conditional name="prediction_options"> |
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222 <param name="prediction_option" type="select" label="Select the type of prediction"> |
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223 <option value="predict">Predict class labels</option> |
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224 <option value="advanced">Include advanced options</option> |
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225 </param> |
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226 <when value="predict"> |
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227 </when> |
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228 <when value="advanced"> |
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229 </when> |
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230 </conditional> |
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231 </when> |
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232 <when value="train"> |
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233 <conditional name="selected_algorithms"> |
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234 <yield /> |
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235 </conditional> |
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236 </when> |
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237 </conditional> |
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238 </xml> |
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239 |
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240 <xml name="advanced_section"> |
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241 <section name="options" title="Advanced Options" expanded="False"> |
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242 <yield /> |
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243 </section> |
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244 </xml> |
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245 |
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246 |
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247 <!--Generalized Linear Models--> |
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248 <xml name="loss" token_help=" " token_select="false"> |
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249 <param argument="loss" type="select" label="Loss function" help="@HELP@"> |
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250 <option value="squared_loss" selected="@SELECT@">squared loss</option> |
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251 <option value="huber">huber</option> |
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252 <option value="epsilon_insensitive">epsilon insensitive</option> |
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253 <option value="squared_epsilon_insensitive">squared epsilon insensitive</option> |
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254 <yield/> |
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255 </param> |
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256 </xml> |
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257 |
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258 <xml name="penalty" token_help=" "> |
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259 <param argument="penalty" type="select" label="Penalty (regularization term)" help="@HELP@"> |
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260 <option value="l2" selected="true">l2</option> |
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261 <option value="l1">l1</option> |
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262 <option value="elasticnet">elastic net</option> |
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263 <option value="none">none</option> |
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264 <yield/> |
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265 </param> |
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266 </xml> |
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267 |
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268 <xml name="l1_ratio" token_default_value="0.15" token_help=" "> |
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269 <param argument="l1_ratio" type="float" value="@DEFAULT_VALUE@" label="Elastic Net mixing parameter" help="@HELP@"/> |
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270 </xml> |
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271 |
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272 <xml name="epsilon" token_default_value="0.1" token_help="Used if loss is ‘huber’, ‘epsilon_insensitive’, or ‘squared_epsilon_insensitive’. "> |
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273 <param argument="epsilon" type="float" value="@DEFAULT_VALUE@" label="Epsilon (epsilon-sensitive loss functions only)" help="@HELP@"/> |
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274 </xml> |
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275 |
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276 <xml name="learning_rate_s" token_help=" " token_selected1="false" token_selected2="false"> |
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277 <param argument="learning_rate" type="select" optional="true" label="Learning rate schedule" help="@HELP@"> |
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278 <option value="optimal" selected="@SELECTED1@">optimal</option> |
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279 <option value="constant">constant</option> |
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280 <option value="invscaling" selected="@SELECTED2@">inverse scaling</option> |
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281 <yield/> |
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282 </param> |
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283 </xml> |
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284 |
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285 <xml name="eta0" token_default_value="0.0" token_help="Used with ‘constant’ or ‘invscaling’ schedules. "> |
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286 <param argument="eta0" type="float" value="@DEFAULT_VALUE@" label="Initial learning rate" help="@HELP@"/> |
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287 </xml> |
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288 |
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289 <xml name="power_t" token_default_value="0.5" token_help=" "> |
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290 <param argument="power_t" type="float" value="@DEFAULT_VALUE@" label="Exponent for inverse scaling learning rate" help="@HELP@"/> |
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291 </xml> |
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292 |
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293 <xml name="normalize" token_checked="false" token_help=" "> |
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294 <param argument="normalize" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="@CHECKED@" label="Normalize samples before training" help=" "/> |
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295 </xml> |
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296 |
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297 <xml name="copy_X" token_checked="true" token_help=" "> |
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298 <param argument="copy_X" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="@CHECKED@" label="Use a copy of samples" help="If false, samples would be overwritten. "/> |
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299 </xml> |
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300 |
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301 <xml name="ridge_params"> |
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302 <expand macro="normalize"/> |
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303 <expand macro="alpha" default_value="1.0"/> |
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304 <expand macro="fit_intercept"/> |
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305 <expand macro="max_iter" default_value=""/> |
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306 <expand macro="tol" default_value="0.001" help_text="Precision of the solution. "/> |
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307 <!--class_weight--> |
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308 <expand macro="copy_X"/> |
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309 <param argument="solver" type="select" value="" label="Solver to use in the computational routines" help=" "> |
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310 <option value="auto" selected="true">auto</option> |
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311 <option value="svd">svd</option> |
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312 <option value="cholesky">cholesky</option> |
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313 <option value="lsqr">lsqr</option> |
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314 <option value="sparse_cg">sparse_cg</option> |
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315 <option value="sag">sag</option> |
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316 </param> |
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317 <expand macro="random_state"/> |
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318 </xml> |
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319 |
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320 <!--Ensemble methods--> |
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321 <xml name="n_estimators" token_default_value="10" token_help=" "> |
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322 <param argument="n_estimators" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Number of trees in the forest" help="@HELP@"/> |
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323 </xml> |
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324 |
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325 <xml name="max_depth" token_default_value="" token_help=" "> |
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326 <param argument="max_depth" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Maximum depth of the tree" help="@HELP@"/> |
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327 </xml> |
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328 |
5
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329 <xml name="min_samples_split" token_type="integer" token_default_value="2" token_help=" "> |
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330 <param argument="min_samples_split" type="@TYPE@" optional="true" value="@DEFAULT_VALUE@" label="Minimum number of samples required to split an internal node" help="@HELP@"/> |
0
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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331 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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332 |
5
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planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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333 <xml name="min_samples_leaf" token_type="integer" token_default_value="1" token_label="Minimum number of samples in newly created leaves" token_help=" "> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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334 <param argument="min_samples_leaf" type="@TYPE@" optional="true" value="@DEFAULT_VALUE@" label="@LABEL@" help="@HELP@"/> |
0
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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changeset
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335 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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336 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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337 <xml name="min_weight_fraction_leaf" token_default_value="0.0" token_help=" "> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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338 <param argument="min_weight_fraction_leaf" type="float" optional="true" value="@DEFAULT_VALUE@" label="Minimum weighted fraction of the input samples required to be at a leaf node" help="@HELP@"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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339 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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changeset
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340 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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341 <xml name="max_leaf_nodes" token_default_value="" token_help=" "> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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342 <param argument="max_leaf_nodes" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Maximum number of leaf nodes in best-first method" help="@HELP@"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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343 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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344 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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345 <xml name="min_impurity_decrease" token_default_value="0" token_help=" "> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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346 <param argument="min_impurity_decrease" type="float" value="@DEFAULT_VALUE@" optional="true" label="The threshold value of impurity for stopping node splitting" help="@HELP@"/> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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347 </xml> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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348 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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349 <xml name="bootstrap" token_checked="true" token_help=" "> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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350 <param argument="bootstrap" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="@CHECKED@" label="Use bootstrap samples for building trees." help="@HELP@"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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351 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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|
352 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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353 <xml name="criterion" token_help=" "> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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354 <param argument="criterion" type="select" label="Function to measure the quality of a split" help=" "> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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355 <option value="gini" selected="true">Gini impurity</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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356 <option value="entropy">Information gain</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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357 <yield/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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358 </param> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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359 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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|
360 |
5
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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361 <xml name="criterion2" token_help=""> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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362 <param argument="criterion" type="select" label="Function to measure the quality of a split" > |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
bgruening
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363 <option value="mse">mse - mean squared error</option> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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364 <option value="mae">mae - mean absolute error</option> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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365 <yield/> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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366 </param> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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367 </xml> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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|
368 |
0
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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369 <xml name="oob_score" token_checked="false" token_help=" "> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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370 <param argument="oob_score" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="@CHECKED@" label="Use out-of-bag samples to estimate the generalization error" help="@HELP@"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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371 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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|
372 |
5
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planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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373 <xml name="max_features"> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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374 <conditional name="select_max_features"> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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375 <param argument="max_features" type="select" label="max_features"> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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376 <option value="auto" selected="true">auto - max_features=n_features</option> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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377 <option value="sqrt">sqrt - max_features=sqrt(n_features)</option> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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378 <option value="log2">log2 - max_features=log2(n_features)</option> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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379 <option value="number_input">I want to type the number in or input None type</option> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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380 </param> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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381 <when value="auto"> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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382 </when> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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383 <when value="sqrt"> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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parents:
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384 </when> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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385 <when value="log2"> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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386 </when> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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387 <when value="number_input"> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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388 <param name="num_max_features" type="float" value="" optional="true" label="Input max_features number:" help="If int, consider the number of features at each split; If float, then max_features is a percentage and int(max_features * n_features) features are considered at each split."/> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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389 </when> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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390 </conditional> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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391 </xml> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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|
392 |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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393 <xml name="verbose" token_default_value="0" token_help="If 1 then it prints progress and performance once in a while. If greater than 1 then it prints progress and performance for every tree."> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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394 <param argument="verbose" type="integer" value="@DEFAULT_VALUE@" optional="true" label="Enable verbose output" help="@HELP@"/> |
0
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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395 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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|
396 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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397 <xml name="learning_rate" token_default_value="1.0" token_help=" "> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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398 <param argument="learning_rate" type="float" optional="true" value="@DEFAULT_VALUE@" label="Learning rate" help="@HELP@"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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399 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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changeset
|
400 |
5
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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|
401 <xml name="subsample" token_help=" "> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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402 <param argument="subsample" type="float" value="1.0" optional="true" label="The fraction of samples to be used for fitting the individual base learners" help="@HELP@"/> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
bgruening
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|
403 </xml> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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changeset
|
404 |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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405 <xml name="presort"> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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406 <param argument="presort" type="select" label="Whether to presort the data to speed up the finding of best splits in fitting" > |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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407 <option value="auto" selected="true">auto</option> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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408 <option value="true">true</option> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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409 <option value="false">false</option> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
bgruening
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410 </param> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
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|
411 </xml> |
0
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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|
412 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
413 <!--Parameters--> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
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414 <xml name="tol" token_default_value="0.0" token_help_text="Early stopping heuristics based on the relative center changes. Set to default (0.0) to disable this convergence detection."> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
415 <param argument="tol" type="float" optional="true" value="@DEFAULT_VALUE@" label="Tolerance" help="@HELP_TEXT@"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
416 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
417 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
418 <xml name="n_clusters" token_default_value="8"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
419 <param argument="n_clusters" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Number of clusters" help=" "/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
420 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
421 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
422 <xml name="fit_intercept" token_checked="true"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
423 <param argument="fit_intercept" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="@CHECKED@" label="Estimate the intercept" help="If false, the data is assumed to be already centered."/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
424 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
425 |
5
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
bgruening
parents:
4
diff
changeset
|
426 <xml name="n_jobs" token_default_value="1" token_label="The number of jobs to run in parallel for both fit and predict"> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
bgruening
parents:
4
diff
changeset
|
427 <param argument="n_jobs" type="integer" value="@DEFAULT_VALUE@" optional="true" label="@LABEL@" help="If -1, then the number of jobs is set to the number of cores"/> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
bgruening
parents:
4
diff
changeset
|
428 </xml> |
fce83b4979a1
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 35fa73d6e9ba8f0789ddfb743d893d950a68af02
bgruening
parents:
4
diff
changeset
|
429 |
0
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
430 <xml name="n_iter" token_default_value="5" token_help_text="The number of passes over the training data (aka epochs). "> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
431 <param argument="n_iter" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Number of iterations" help="@HELP_TEXT@"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
432 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
433 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
434 <xml name="shuffle" token_checked="true" token_help_text=" " token_label="Shuffle data after each iteration"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
435 <param argument="shuffle" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="@CHECKED@" label="@LABEL@" help="@HELP_TEXT@"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
436 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
437 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
438 <xml name="random_state" token_default_value="" token_help_text="Integer number. The seed of the pseudo random number generator to use when shuffling the data. A fixed seed allows reproducible results."> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
439 <param argument="random_state" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Random seed number" help="@HELP_TEXT@"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
440 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
441 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
442 <xml name="warm_start" token_checked="true" token_help_text="When set to True, reuse the solution of the previous call to fit as initialization,otherwise, just erase the previous solution."> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
443 <param argument="warm_start" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="@CHECKED@" label="Perform warm start" help="@HELP_TEXT@"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
444 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
445 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
446 <xml name="C" token_default_value="1.0" token_help_text="Penalty parameter C of the error term."> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
447 <param argument="C" type="float" optional="true" value="@DEFAULT_VALUE@" label="Penalty parameter" help="@HELP_TEXT@"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
448 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
449 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
450 <!--xml name="class_weight" token_default_value="" token_help_text=""> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
451 <param argument="class_weight" type="" optional="true" value="@DEFAULT_VALUE@" label="" help="@HELP_TEXT@"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
452 </xml--> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
453 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
454 <xml name="alpha" token_default_value="0.0001" token_help_text="Constant that multiplies the regularization term if regularization is used. "> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
455 <param argument="alpha" type="float" optional="true" value="@DEFAULT_VALUE@" label="Regularization coefficient" help="@HELP_TEXT@"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
456 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
457 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
458 <xml name="n_samples" token_default_value="100" token_help_text="The total number of points equally divided among clusters."> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
459 <param argument="n_samples" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Number of samples" help="@HELP_TEXT@"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
460 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
461 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
462 <xml name="n_features" token_default_value="2" token_help_text="Number of different numerical properties produced for each sample."> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
463 <param argument="n_features" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Number of features" help="@HELP_TEXT@"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
464 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
465 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
466 <xml name="noise" token_default_value="0.0" token_help_text="Floating point number. "> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
467 <param argument="noise" type="float" optional="true" value="@DEFAULT_VALUE@" label="Standard deviation of the Gaussian noise added to the data" help="@HELP_TEXT@"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
468 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
469 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
470 <xml name="C" token_default_value="1.0" token_help_text="Penalty parameter C of the error term. "> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
471 <param argument="C" type="float" optional="true" value="@DEFAULT_VALUE@" label="Penalty parameter" help="@HELP_TEXT@"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
472 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
473 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
474 <xml name="max_iter" token_default_value="300" token_label="Maximum number of iterations per single run" token_help_text=" "> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
475 <param argument="max_iter" type="integer" optional="true" value="@DEFAULT_VALUE@" label="@LABEL@" help="@HELP_TEXT@"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
476 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
477 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
478 <xml name="n_init" token_default_value="10" > |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
479 <param argument="n_init" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Number of runs with different centroid seeds" help=" "/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
480 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
481 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
482 <xml name="init"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
483 <param argument="init" type="select" label="Centroid initialization method" help="''k-means++'' selects initial cluster centers that speed up convergence. ''random'' chooses k observations (rows) at random from data as initial centroids."> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
484 <option value="k-means++">k-means++</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
485 <option value="random">random</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
486 </param> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
487 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
488 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
489 <xml name="gamma" token_default_value="1.0" token_label="Scaling parameter" token_help_text=" "> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
490 <param argument="gamma" type="float" optional="true" value="@DEFAULT_VALUE@" label="@LABEL@" help="@HELP_TEXT@"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
491 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
492 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
493 <xml name="degree" token_default_value="3" token_label="Degree of the polynomial" token_help_text=" "> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
494 <param argument="degree" type="integer" optional="true" value="@DEFAULT_VALUE@" label="@LABEL@" help="@HELP_TEXT@"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
495 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
496 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
497 <xml name="coef0" token_default_value="1" token_label="Zero coefficient" token_help_text=" "> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
498 <param argument="coef0" type="integer" optional="true" value="@DEFAULT_VALUE@" label="@LABEL@" help="@HELP_TEXT@"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
499 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
500 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
501 <xml name="pos_label" token_default_value=""> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
502 <param argument="pos_label" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Label of the positive class" help=" "/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
503 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
504 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
505 <xml name="average"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
506 <param argument="average" type="select" optional="true" label="Averaging type" help=" "> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
507 <option value="micro">Calculate metrics globally by counting the total true positives, false negatives and false positives. (micro)</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
508 <option value="samples">Calculate metrics for each instance, and find their average. Only meaningful for multilabel. (samples)</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
509 <option value="macro">Calculate metrics for each label, and find their unweighted mean. This does not take label imbalance into account. (macro)</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
510 <option value="weighted">Calculate metrics for each label, and find their average, weighted by support (the number of true instances for each label). This alters ‘macro’ to account for label imbalance; it can result in an F-score that is not between precision and recall. (weighted)</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
511 <option value="None">None</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
512 <yield/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
513 </param> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
514 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
515 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
516 <xml name="beta"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
517 <param argument="beta" type="float" value="1.0" label="The strength of recall versus precision in the F-score" help=" "/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
518 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
519 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
520 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
521 <!--Data interface--> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
522 |
10
badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
9
diff
changeset
|
523 <xml name="samples_tabular" token_multiple1="false" token_multiple2="false"> |
0
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
524 <param name="infile1" type="data" format="tabular" label="Training samples dataset:"/> |
10
badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
9
diff
changeset
|
525 <param name="header1" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" /> |
badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
9
diff
changeset
|
526 <conditional name="column_selector_options_1"> |
badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
9
diff
changeset
|
527 <expand macro="samples_column_selector_options" multiple="@MULTIPLE1@"/> |
badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
9
diff
changeset
|
528 </conditional> |
0
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
529 <param name="infile2" type="data" format="tabular" label="Dataset containing class labels:"/> |
10
badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
9
diff
changeset
|
530 <param name="header2" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" /> |
badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
9
diff
changeset
|
531 <conditional name="column_selector_options_2"> |
badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
9
diff
changeset
|
532 <expand macro="samples_column_selector_options" column_option="selected_column_selector_option2" col_name="col2" multiple="@MULTIPLE2@" infile="infile2"/> |
badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
9
diff
changeset
|
533 </conditional> |
0
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
534 <yield/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
535 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
536 |
10
badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
9
diff
changeset
|
537 <xml name="samples_column_selector_options" token_column_option="selected_column_selector_option" token_col_name="col1" token_multiple="False" token_infile="infile1"> |
badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
9
diff
changeset
|
538 <param name="@COLUMN_OPTION@" type="select" label="Choose how to select data by column:"> |
badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
9
diff
changeset
|
539 <option value="by_index_number" selected="true">Select columns by column index number(s)</option> |
12
d1ba2cc428e3
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit cd4a8b019168acd5a513c57a1b1f380622f230f6
bgruening
parents:
11
diff
changeset
|
540 <option value="by_header_name">Select columns by column header name(s)</option> |
10
badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
9
diff
changeset
|
541 <option value="all_but_by_index_number">All columns but by column index number(s)</option> |
12
d1ba2cc428e3
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit cd4a8b019168acd5a513c57a1b1f380622f230f6
bgruening
parents:
11
diff
changeset
|
542 <option value="all_but_by_header_name">All columns but by column header name(s)</option> |
10
badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
9
diff
changeset
|
543 <option value="all_columns">All columns</option> |
badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
9
diff
changeset
|
544 </param> |
badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
9
diff
changeset
|
545 <when value="by_index_number"> |
badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
9
diff
changeset
|
546 <param name="@COL_NAME@" multiple="@MULTIPLE@" type="data_column" data_ref="@INFILE@" label="Select target column(s):"/> |
badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
9
diff
changeset
|
547 </when> |
12
d1ba2cc428e3
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit cd4a8b019168acd5a513c57a1b1f380622f230f6
bgruening
parents:
11
diff
changeset
|
548 <when value="by_header_name"> |
15
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
549 <param name="@COL_NAME@" type="text" value="" label="Type header name(s):" help="Comma-separated string. For example: target1,target2"/> |
12
d1ba2cc428e3
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit cd4a8b019168acd5a513c57a1b1f380622f230f6
bgruening
parents:
11
diff
changeset
|
550 </when> |
11
0ba38603a0d6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 64158f357e708f0b60d2669d92d614f7aee34c0e
bgruening
parents:
10
diff
changeset
|
551 <when value="all_but_by_index_number"> |
0ba38603a0d6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 64158f357e708f0b60d2669d92d614f7aee34c0e
bgruening
parents:
10
diff
changeset
|
552 <param name="@COL_NAME@" multiple="@MULTIPLE@" type="data_column" data_ref="@INFILE@" label="Select target column(s):"/> |
0ba38603a0d6
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 64158f357e708f0b60d2669d92d614f7aee34c0e
bgruening
parents:
10
diff
changeset
|
553 </when> |
12
d1ba2cc428e3
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit cd4a8b019168acd5a513c57a1b1f380622f230f6
bgruening
parents:
11
diff
changeset
|
554 <when value="all_but_by_header_name"> |
15
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
555 <param name="@COL_NAME@" type="text" value="" label="Type header name(s):" help="Comma-separated string. For example: target1,target2"/> |
12
d1ba2cc428e3
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit cd4a8b019168acd5a513c57a1b1f380622f230f6
bgruening
parents:
11
diff
changeset
|
556 </when> |
10
badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
9
diff
changeset
|
557 <when value="all_columns"> |
badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
9
diff
changeset
|
558 </when> |
badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
9
diff
changeset
|
559 </xml> |
badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
9
diff
changeset
|
560 |
0
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
561 <xml name="clf_inputs_extended" token_label1=" " token_label2=" " token_multiple="False"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
562 <conditional name="true_columns"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
563 <param name="selected_input1" type="select" label="Select the input type of true labels dataset:"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
564 <option value="tabular" selected="true">Tabular</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
565 <option value="sparse">Sparse</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
566 </param> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
567 <when value="tabular"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
568 <param name="infile1" type="data" label="@LABEL1@"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
569 <param name="col1" type="data_column" data_ref="infile1" label="Select the target column:"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
570 </when> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
571 <when value="sparse"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
572 <param name="infile1" type="data" format="txt" label="@LABEL1@"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
573 </when> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
574 </conditional> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
575 <conditional name="predicted_columns"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
576 <param name="selected_input2" type="select" label="Select the input type of predicted labels dataset:"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
577 <option value="tabular" selected="true">Tabular</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
578 <option value="sparse">Sparse</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
579 </param> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
580 <when value="tabular"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
581 <param name="infile2" type="data" label="@LABEL2@"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
582 <param name="col2" multiple="@MULTIPLE@" type="data_column" data_ref="infile2" label="Select target column(s):"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
583 </when> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
584 <when value="sparse"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
585 <param name="infile2" type="data" format="txt" label="@LABEL1@"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
586 </when> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
587 </conditional> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
588 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
589 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
590 <xml name="clf_inputs" token_label1="Dataset containing true labels (tabular):" token_label2="Dataset containing predicted values (tabular):" token_multiple1="False" token_multiple="False"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
591 <param name="infile1" type="data" format="tabular" label="@LABEL1@"/> |
7
8a42afda5083
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee
bgruening
parents:
6
diff
changeset
|
592 <param name="header1" type="boolean" optional="True" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" /> |
10
badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
9
diff
changeset
|
593 <conditional name="column_selector_options_1"> |
badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
9
diff
changeset
|
594 <expand macro="samples_column_selector_options" multiple="@MULTIPLE1@"/> |
badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
9
diff
changeset
|
595 </conditional> |
0
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
596 <param name="infile2" type="data" format="tabular" label="@LABEL2@"/> |
7
8a42afda5083
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee
bgruening
parents:
6
diff
changeset
|
597 <param name="header2" type="boolean" optional="True" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" /> |
10
badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
9
diff
changeset
|
598 <conditional name="column_selector_options_2"> |
badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
9
diff
changeset
|
599 <expand macro="samples_column_selector_options" column_option="selected_column_selector_option2" col_name="col2" multiple="@MULTIPLE@" infile="infile2"/> |
badf6af0a182
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 97c4f22cdcfa6cddeeffc7b102c418a7ff12a888
bgruening
parents:
9
diff
changeset
|
600 </conditional> |
0
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
601 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
602 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
603 <xml name="multiple_input" token_name="input_files" token_max_num="10" token_format="txt" token_label="Sparse matrix file (.mtx, .txt)" token_help_text="Specify a sparse matrix file in .txt format."> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
604 <repeat name="@NAME@" min="1" max="@MAX_NUM@" title="Select input file(s):"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
605 <param name="input" type="data" format="@FORMAT@" label="@LABEL@" help="@HELP_TEXT@"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
606 </repeat> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
607 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
608 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
609 <xml name="sparse_target" token_label1="Select a sparse matrix:" token_label2="Select the tabular containing true labels:" token_multiple="False" token_format1="txt" token_format2="tabular" token_help1="" token_help2=""> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
610 <param name="infile1" type="data" format="@FORMAT1@" label="@LABEL1@" help="@HELP1@"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
611 <param name="infile2" type="data" format="@FORMAT2@" label="@LABEL2@" help="@HELP2@"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
612 <param name="col2" multiple="@MULTIPLE@" type="data_column" data_ref="infile2" label="Select target column(s):"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
613 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
614 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
615 <xml name="sl_mixed_input"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
616 <conditional name="input_options"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
617 <param name="selected_input" type="select" label="Select input type:"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
618 <option value="tabular" selected="true">tabular data</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
619 <option value="sparse">sparse matrix</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
620 </param> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
621 <when value="tabular"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
622 <expand macro="samples_tabular" multiple1="true"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
623 </when> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
624 <when value="sparse"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
625 <expand macro="sparse_target"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
626 </when> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
627 </conditional> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
628 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
629 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
630 <!--Advanced options--> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
631 <xml name="nn_advanced_options"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
632 <section name="options" title="Advanced Options" expanded="False"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
633 <yield/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
634 <param argument="weights" type="select" label="Weight function" help="Used in prediction."> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
635 <option value="uniform" selected="true">Uniform weights. All points in each neighborhood are weighted equally. (Uniform)</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
636 <option value="distance">Weight points by the inverse of their distance. (Distance)</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
637 </param> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
638 <param argument="algorithm" type="select" label="Neighbor selection algorithm" help=" "> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
639 <option value="auto" selected="true">Auto</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
640 <option value="ball_tree">BallTree</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
641 <option value="kd_tree">KDTree</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
642 <option value="brute">Brute-force</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
643 </param> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
644 <param argument="leaf_size" type="integer" value="30" label="Leaf size" help="Used with BallTree and KDTree. Affects the time and memory usage of the constructed tree."/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
645 <!--param name="metric"--> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
646 <!--param name="p"--> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
647 <!--param name="metric_params"--> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
648 </section> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
649 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
650 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
651 <xml name="svc_advanced_options"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
652 <section name="options" title="Advanced Options" expanded="False"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
653 <yield/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
654 <param argument="kernel" type="select" optional="true" label="Kernel type" help="Kernel type to be used in the algorithm. If none is given, ‘rbf’ will be used."> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
655 <option value="rbf" selected="true">rbf</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
656 <option value="linear">linear</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
657 <option value="poly">poly</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
658 <option value="sigmoid">sigmoid</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
659 <option value="precomputed">precomputed</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
660 </param> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
661 <param argument="degree" type="integer" optional="true" value="3" label="Degree of the polynomial (polynomial kernel only)" help="Ignored by other kernels. dafault : 3 "/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
662 <!--TODO: param argument="gamma" float, optional (default=’auto’) --> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
663 <param argument="coef0" type="float" optional="true" value="0.0" label="Zero coefficient (polynomial and sigmoid kernels only)" |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
664 help="Independent term in kernel function. dafault: 0.0 "/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
665 <param argument="shrinking" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
666 label="Use the shrinking heuristic" help=" "/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
667 <param argument="probability" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="false" |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
668 label="Enable probability estimates. " help="This must be enabled prior to calling fit, and will slow down that method."/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
669 <!-- param argument="cache_size"--> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
670 <!--expand macro="class_weight"/--> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
671 <expand macro="tol" default_value="0.001" help_text="Tolerance for stopping criterion. "/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
672 <expand macro="max_iter" default_value="-1" label="Solver maximum number of iterations" help_text="Hard limit on iterations within solver, or -1 for no limit."/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
673 <!--param argument="decision_function_shape"--> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
674 <expand macro="random_state" help_text="Integer number. The seed of the pseudo random number generator to use when shuffling the data for probability estimation. A fixed seed allows reproducible results."/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
675 </section> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
676 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
677 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
678 <xml name="spectral_clustering_advanced_options"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
679 <section name="options" title="Advanced Options" expanded="False"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
680 <expand macro="n_clusters"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
681 <param argument="eigen_solver" type="select" value="" label="Eigen solver" help="The eigenvalue decomposition strategy to use."> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
682 <option value="arpack" selected="true">arpack</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
683 <option value="lobpcg">lobpcg</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
684 <option value="amg">amg</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
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changeset
|
685 <!--None--> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
686 </param> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
687 <expand macro="random_state"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
688 <expand macro="n_init"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
689 <param argument="gamma" type="float" optional="true" value="1.0" label="Kernel scaling factor" help="Scaling factor of RBF, polynomial, exponential chi^2 and sigmoid affinity kernel. Ignored for affinity=''nearest_neighbors''."/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
690 <param argument="affinity" type="select" label="Affinity" help="Affinity kernel to use. "> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
691 <option value="rbf" selected="true">RBF</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
692 <option value="precomputed">precomputed</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
693 <option value="nearest_neighbors">Nearset neighbors</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
694 </param> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
695 <param argument="n_neighbors" type="integer" optional="true" value="10" label="Number of neighbors" help="Number of neighbors to use when constructing the affinity matrix using the nearest neighbors method. Ignored for affinity=''rbf''"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
696 <!--param argument="eigen_tol"--> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
697 <param argument="assign_labels" type="select" label="Assign labels" help="The strategy to use to assign labels in the embedding space."> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
698 <option value="kmeans" selected="true">kmeans</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
699 <option value="discretize">discretize</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
700 </param> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
701 <param argument="degree" type="integer" optional="true" value="3" |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
702 label="Degree of the polynomial (polynomial kernel only)" help="Ignored by other kernels. dafault : 3 "/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
703 <param argument="coef0" type="integer" optional="true" value="1" |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
704 label="Zero coefficient (polynomial and sigmoid kernels only)" help="Ignored by other kernels. dafault : 1 "/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
705 <!--param argument="kernel_params"--> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
706 </section> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
707 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
708 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
709 <xml name="minibatch_kmeans_advanced_options"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
710 <section name="options" title="Advanced Options" expanded="False"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
711 <expand macro="n_clusters"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
712 <expand macro="init"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
713 <expand macro="n_init" default_value="3"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
714 <expand macro="max_iter" default_value="100"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
715 <expand macro="tol" help_text="Early stopping heuristics based on normalized center change. To disable set to 0.0 ."/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
716 <expand macro="random_state"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
717 <param argument="batch_size" type="integer" optional="true" value="100" label="Batch size" help="Size of the mini batches."/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
718 <!--param argument="compute_labels"--> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
719 <param argument="max_no_improvement" type="integer" optional="true" value="10" label="Maximum number of improvement attempts" help=" |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
720 Convergence detection based on inertia (the consecutive number of mini batches that doe not yield an improvement on the smoothed inertia). |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
721 To disable, set max_no_improvement to None. "/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
722 <param argument="init_size" type="integer" optional="true" value="" label="Number of random initialization samples" help="Number of samples to randomly sample for speeding up the initialization . ( default: 3 * batch_size )"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
723 <param argument="reassignment_ratio" type="float" optional="true" value="0.01" label="Re-assignment ratio" help="Controls the fraction of the maximum number of counts for a center to be reassigned. Higher values yield better clustering results."/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
724 </section> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
725 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
726 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
727 <xml name="kmeans_advanced_options"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
728 <section name="options" title="Advanced Options" expanded="False"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
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parents:
diff
changeset
|
729 <expand macro="n_clusters"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
730 <expand macro="init"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
731 <expand macro="n_init"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
732 <expand macro="max_iter"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
733 <expand macro="tol" default_value="0.0001" help_text="Relative tolerance with regards to inertia to declare convergence."/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
734 <!--param argument="precompute_distances"/--> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
735 <expand macro="random_state"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
736 <param argument="copy_x" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" label="Use a copy of data for precomputing distances" help="Mofifying the original data introduces small numerical differences caused by subtracting and then adding the data mean."/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
737 </section> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
738 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
739 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
740 <xml name="birch_advanced_options"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
741 <section name="options" title="Advanced Options" expanded="False"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
742 <param argument="threshold" type="float" optional="true" value="0.5" label="Subcluster radius threshold" help="The radius of the subcluster obtained by merging a new sample; the closest subcluster should be less than the threshold to avoid a new subcluster."/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
743 <param argument="branching_factor" type="integer" optional="true" value="50" label="Maximum number of subclusters per branch" help="Maximum number of CF subclusters in each node."/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
744 <expand macro="n_clusters" default_value="3"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
745 <!--param argument="compute_labels"/--> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
746 </section> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
747 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
748 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
749 <xml name="dbscan_advanced_options"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
750 <section name="options" title="Advanced Options" expanded="False"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
751 <param argument="eps" type="float" optional="true" value="0.5" label="Maximum neighborhood distance" help="The maximum distance between two samples for them to be considered as in the same neighborhood."/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
752 <param argument="min_samples" type="integer" optional="true" value="5" label="Minimal core point density" help="The number of samples (or total weight) in a neighborhood for a point (including the point itself) to be considered as a core point."/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
753 <param argument="metric" type="text" optional="true" value="euclidean" label="Metric" help="The metric to use when calculating distance between instances in a feature array."/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
754 <param argument="algorithm" type="select" label="Pointwise distance computation algorithm" help="The algorithm to be used by the NearestNeighbors module to compute pointwise distances and find nearest neighbors."> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
755 <option value="auto" selected="true">auto</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
756 <option value="ball_tree">ball_tree</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
757 <option value="kd_tree">kd_tree</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
758 <option value="brute">brute</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
759 </param> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
760 <param argument="leaf_size" type="integer" optional="true" value="30" label="Leaf size" help="Leaf size passed to BallTree or cKDTree. Memory and time efficieny factor in tree constrution and querying."/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
761 </section> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
762 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
763 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
764 <xml name="clustering_algorithms_options"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
765 <conditional name="algorithm_options"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
766 <param name="selected_algorithm" type="select" label="Clustering Algorithm"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
767 <option value="KMeans" selected="true">KMeans</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
768 <option value="SpectralClustering">Spectral Clustering</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
769 <option value="MiniBatchKMeans">Mini Batch KMeans</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
770 <option value="DBSCAN">DBSCAN</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
771 <option value="Birch">Birch</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
772 </param> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
773 <when value="KMeans"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
774 <expand macro="kmeans_advanced_options"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
775 </when> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
776 <when value="DBSCAN"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
777 <expand macro="dbscan_advanced_options"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
778 </when> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
779 <when value="Birch"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
780 <expand macro="birch_advanced_options"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
781 </when> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
782 <when value="SpectralClustering"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
783 <expand macro="spectral_clustering_advanced_options"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
784 </when> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
785 <when value="MiniBatchKMeans"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
786 <expand macro="minibatch_kmeans_advanced_options"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
787 </when> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
788 </conditional> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
789 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
790 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
791 <xml name="distance_metrics"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
792 <param argument="metric" type="select" label="Distance metric" help=" "> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
793 <option value="euclidean" selected="true">euclidean</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
794 <option value="cityblock">cityblock</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
795 <option value="cosine">cosine</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
796 <option value="l1">l1</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
797 <option value="l2">l2</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
798 <option value="manhattan">manhattan</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
799 <yield/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
800 </param> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
801 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
802 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
803 <xml name="distance_nonsparse_metrics"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
804 <option value="braycurtis">braycurtis</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
805 <option value="canberra">canberra</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
806 <option value="chebyshev">chebyshev</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
807 <option value="correlation">correlation</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
808 <option value="dice">dice</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
809 <option value="hamming">hamming</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
810 <option value="jaccard">jaccard</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
811 <option value="kulsinski">kulsinski</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
812 <option value="mahalanobis">mahalanobis</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
813 <option value="matching">matching</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
814 <option value="minkowski">minkowski</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
815 <option value="rogerstanimoto">rogerstanimoto</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
816 <option value="russellrao">russellrao</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
817 <option value="seuclidean">seuclidean</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
818 <option value="sokalmichener">sokalmichener</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
819 <option value="sokalsneath">sokalsneath</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
820 <option value="sqeuclidean">sqeuclidean</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
821 <option value="yule">yule</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
822 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
823 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
824 <xml name="pairwise_kernel_metrics"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
825 <param argument="metric" type="select" label="Pirwise Kernel metric" help=" "> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
826 <option value="rbf" selected="true">rbf</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
827 <option value="sigmoid">sigmoid</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
828 <option value="polynomial">polynomial</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
829 <option value="linear" selected="true">linear</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
830 <option value="chi2">chi2</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
831 <option value="additive_chi2">additive_chi2</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
832 </param> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
833 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
834 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
835 <xml name="sparse_pairwise_metric_functions"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
836 <param name="selected_metric_function" type="select" label="Select the pairwise metric you want to compute:"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
837 <option value="euclidean_distances" selected="true">Euclidean distance matrix</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
838 <option value="pairwise_distances">Distance matrix</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
839 <option value="pairwise_distances_argmin">Minimum distances between one point and a set of points</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
840 <yield/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
841 </param> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
842 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
843 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
844 <xml name="pairwise_metric_functions"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
845 <option value="additive_chi2_kernel" >Additive chi-squared kernel</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
846 <option value="chi2_kernel">Exponential chi-squared kernel</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
847 <option value="linear_kernel">Linear kernel</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
848 <option value="manhattan_distances">L1 distances</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
849 <option value="pairwise_kernels">Kernel</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
850 <option value="polynomial_kernel">Polynomial kernel</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
851 <option value="rbf_kernel">Gaussian (rbf) kernel</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
852 <option value="laplacian_kernel">Laplacian kernel</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
853 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
854 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
855 <xml name="sparse_pairwise_condition"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
856 <when value="pairwise_distances"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
857 <section name="options" title="Advanced Options" expanded="False"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
858 <expand macro="distance_metrics"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
859 <yield/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
860 </expand> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
861 </section> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
862 </when> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
863 <when value="euclidean_distances"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
864 <section name="options" title="Advanced Options" expanded="False"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
865 <param argument="squared" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="false" |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
866 label="Return squared Euclidean distances" help=" "/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
867 </section> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
868 </when> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
869 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
870 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
871 <xml name="argmin_distance_condition"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
872 <when value="pairwise_distances_argmin"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
873 <section name="options" title="Advanced Options" expanded="False"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
874 <param argument="axis" type="integer" optional="true" value="1" label="Axis" help="Axis along which the argmin and distances are to be computed."/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
875 <expand macro="distance_metrics"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
876 <yield/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
877 </expand> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
878 <param argument="batch_size" type="integer" optional="true" value="500" label="Batch size" help="Number of rows to be processed in each batch run."/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
879 </section> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
880 </when> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
881 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
882 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
883 <xml name="sparse_preprocessors"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
884 <param name="selected_pre_processor" type="select" label="Select a preprocessor:"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
885 <option value="StandardScaler" selected="true">Standard Scaler (Standardizes features by removing the mean and scaling to unit variance)</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
886 <option value="Binarizer">Binarizer (Binarizes data)</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
887 <option value="Imputer">Imputer (Completes missing values)</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
888 <option value="MaxAbsScaler">Max Abs Scaler (Scales features by their maximum absolute value)</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
889 <option value="Normalizer">Normalizer (Normalizes samples individually to unit norm)</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
890 <yield/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
891 </param> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
892 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
893 |
15
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
894 <xml name="sparse_preprocessors_ext"> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
895 <expand macro="sparse_preprocessors"> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
896 <option value="KernelCenterer">Kernel Centerer (Centers a kernel matrix)</option> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
897 <option value="MinMaxScaler">Minmax Scaler (Scales features to a range)</option> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
898 <option value="PolynomialFeatures">Polynomial Features (Generates polynomial and interaction features)</option> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
899 <option value="RobustScaler">Robust Scaler (Scales features using outlier-invariance statistics)</option> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
900 </expand> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
901 </xml> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
902 |
0
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
903 <xml name="sparse_preprocessor_options"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
904 <when value="Binarizer"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
905 <section name="options" title="Advanced Options" expanded="False"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
906 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
907 label="Use a copy of data for precomputing binarization" help=" "/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
908 <param argument="threshold" type="float" optional="true" value="0.0" |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
909 label="Threshold" |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
910 help="Feature values below or equal to this are replaced by 0, above it by 1. Threshold may not be less than 0 for operations on sparse matrices. "/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
911 </section> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
912 </when> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
913 <when value="Imputer"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
914 <section name="options" title="Advanced Options" expanded="False"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
915 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
916 label="Use a copy of data for precomputing imputation" help=" "/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
917 <param argument="strategy" type="select" optional="true" label="Imputation strategy" help=" "> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
918 <option value="mean" selected="true">Replace missing values using the mean along the axis</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
919 <option value="median">Replace missing values using the median along the axis</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
920 <option value="most_frequent">Replace missing using the most frequent value along the axis</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
921 </param> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
922 <param argument="missing_values" type="text" optional="true" value="NaN" |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
923 label="Placeholder for missing values" help="For missing values encoded as numpy.nan, use the string value “NaN”"/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
924 <param argument="axis" type="boolean" optional="true" truevalue="1" falsevalue="0" |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
925 label="Impute along axis = 1" help="If fasle, axis = 0 is selected for imputation. "/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
926 <!--param argument="axis" type="select" optional="true" label="The axis along which to impute" help=" "> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
927 <option value="0" selected="true">Impute along columns</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
928 <option value="1">Impute along rows</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
929 </param--> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
930 </section> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
931 </when> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
932 <when value="StandardScaler"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
933 <section name="options" title="Advanced Options" expanded="False"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
934 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
935 label="Use a copy of data for performing inplace scaling" help=" "/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
936 <param argument="with_mean" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
937 label="Center the data before scaling" help=" "/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
938 <param argument="with_std" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
939 label="Scale the data to unit variance (or unit standard deviation)" help=" "/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
940 </section> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
941 </when> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
942 <when value="MaxAbsScaler"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
943 <section name="options" title="Advanced Options" expanded="False"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
944 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
945 label="Use a copy of data for precomputing scaling" help=" "/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
946 </section> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
947 </when> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
948 <when value="Normalizer"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
949 <section name="options" title="Advanced Options" expanded="False"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
950 <param argument="norm" type="select" optional="true" label="The norm to use to normalize non zero samples" help=" "> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
951 <option value="l1" selected="true">l1</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
952 <option value="l2">l2</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
953 <option value="max">max</option> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
954 </param> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
955 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
956 label="Use a copy of data for precomputing row normalization" help=" "/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
957 </section> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
958 </when> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
959 <yield/> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
960 </xml> |
15
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
961 |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
962 <xml name="sparse_preprocessor_options_ext"> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
963 <expand macro="sparse_preprocessor_options"> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
964 <when value="KernelCenterer"> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
965 <section name="options" title="Advanced Options" expanded="False"> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
966 </section> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
967 </when> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
968 <when value="MinMaxScaler"> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
969 <section name="options" title="Advanced Options" expanded="False"> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
970 <!--feature_range--> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
971 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true" |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
972 label="Use a copy of data for precomputing normalization" help=" "/> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
973 </section> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
974 </when> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
975 <when value="PolynomialFeatures"> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
976 <section name="options" title="Advanced Options" expanded="False"> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
977 <param argument="degree" type="integer" optional="true" value="2" label="The degree of the polynomial features " help=""/> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
978 <param argument="interaction_only" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="false" label="Produce interaction features only" help="(Features that are products of at most degree distinct input features) "/> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
979 <param argument="include_bias" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true" label="Include a bias column" help="Feature in which all polynomial powers are zero "/> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
980 </section> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
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diff
changeset
|
981 </when> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
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parents:
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diff
changeset
|
982 <when value="RobustScaler"> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
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diff
changeset
|
983 <section name="options" title="Advanced Options" expanded="False"> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
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diff
changeset
|
984 <!--=True, =True, copy=True--> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
985 <param argument="with_centering" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true" |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
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diff
changeset
|
986 label="Center the data before scaling" help=" "/> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
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parents:
13
diff
changeset
|
987 <param argument="with_scaling" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true" |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
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diff
changeset
|
988 label="Scale the data to interquartile range" help=" "/> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
989 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true" |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
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diff
changeset
|
990 label="Use a copy of data for inplace scaling" help=" "/> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
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diff
changeset
|
991 </section> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
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diff
changeset
|
992 </when> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
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diff
changeset
|
993 </expand> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
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parents:
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diff
changeset
|
994 </xml> |
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
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parents:
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diff
changeset
|
995 |
16
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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parents:
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diff
changeset
|
996 <xml name="fs_selectfrommodel_prefitted"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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parents:
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diff
changeset
|
997 <param name="input_mode" type="select" label="Construct a new estimator from a selection list?" > |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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parents:
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diff
changeset
|
998 <option value="new" selected="true">Yes</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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parents:
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diff
changeset
|
999 <option value="prefitted">No. Load a prefitted estimator</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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parents:
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diff
changeset
|
1000 </param> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
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diff
changeset
|
1001 <when value="new"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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parents:
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diff
changeset
|
1002 <expand macro="estimator_selector_all"/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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parents:
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changeset
|
1003 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
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diff
changeset
|
1004 <when value="prefitted"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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parents:
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diff
changeset
|
1005 <param name="fitted_estimator" type="data" format='zip' label="Load a prefitted estimator" /> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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parents:
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diff
changeset
|
1006 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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parents:
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diff
changeset
|
1007 </xml> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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parents:
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diff
changeset
|
1008 |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
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diff
changeset
|
1009 <xml name="fs_selectfrommodel_no_prefitted"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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parents:
15
diff
changeset
|
1010 <param name="input_mode" type="select" label="Construct a new estimator from a selection list?" > |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1011 <option value="new" selected="true">Yes</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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parents:
15
diff
changeset
|
1012 </param> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1013 <when value="new"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1014 <expand macro="estimator_selector_all"/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1015 </when> |
9
049c8e817869
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978
bgruening
parents:
8
diff
changeset
|
1016 </xml> |
15
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
13
diff
changeset
|
1017 |
8
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
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parents:
7
diff
changeset
|
1018 <xml name="feature_selection_all"> |
16
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1019 <conditional name="fs_algorithm_selector"> |
8
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1020 <param name="selected_algorithm" type="select" label="Select a feature selection algorithm"> |
16
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1021 <option value="SelectKBest" selected="true">SelectKBest - Select features according to the k highest scores</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1022 <option value="SelectFromModel">SelectFromModel - Meta-transformer for selecting features based on importance weights</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1023 <option value="GenericUnivariateSelect">GenericUnivariateSelect - Univariate feature selector with configurable strategy</option> |
8
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1024 <option value="SelectPercentile">SelectPercentile - Select features according to a percentile of the highest scores</option> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1025 <option value="SelectFpr">SelectFpr - Filter: Select the p-values below alpha based on a FPR test</option> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1026 <option value="SelectFdr">SelectFdr - Filter: Select the p-values for an estimated false discovery rate</option> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1027 <option value="SelectFwe">SelectFwe - Filter: Select the p-values corresponding to Family-wise error rate</option> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1028 <option value="RFE">RFE - Feature ranking with recursive feature elimination</option> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1029 <option value="RFECV">RFECV - Feature ranking with recursive feature elimination and cross-validated selection of the best number of features</option> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1030 <option value="VarianceThreshold">VarianceThreshold - Feature selector that removes all low-variance features</option> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1031 </param> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1032 <when value="SelectFromModel"> |
16
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1033 <conditional name="model_inputter"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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parents:
15
diff
changeset
|
1034 <yield/> |
8
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1035 </conditional> |
16
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1036 <section name="options" title="Advanced Options" expanded="False"> |
8
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1037 <param argument="threshold" type="text" value="" optional="true" label="threshold" help="The threshold value to use for feature selection. e.g. 'mean', 'median', '1.25*mean'." /> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1038 <param argument="norm_order" type="integer" value="1" label="norm_order" help="Order of the norm used to filter the vectors of coefficients below threshold in the case where the coef_ attribute of the estimator is of dimension 2. " /> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1039 </section> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1040 </when> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1041 <when value="GenericUnivariateSelect"> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1042 <expand macro="feature_selection_score_function" /> |
16
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1043 <section name="options" title="Advanced Options" expanded="False"> |
8
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1044 <param argument="mode" type="select" label="Feature selection mode"> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1045 <option value="percentile">percentile</option> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1046 <option value="k_best">k_best</option> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
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diff
changeset
|
1047 <option value="fpr">fpr</option> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1048 <option value="fdr">fdr</option> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1049 <option value="fwe">fwe</option> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
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diff
changeset
|
1050 </param> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
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diff
changeset
|
1051 <param argument="param" type="float" value="" optional="true" label="Parameter of the corresponding mode" help="float or int depending on the feature selection mode" /> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
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diff
changeset
|
1052 </section> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
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diff
changeset
|
1053 </when> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1054 <when value="SelectPercentile"> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
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diff
changeset
|
1055 <expand macro="feature_selection_score_function" /> |
16
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
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diff
changeset
|
1056 <section name="options" title="Advanced Options" expanded="False"> |
8
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1057 <param argument="percentile" type="integer" value="10" optional="True" label="Percent of features to keep" /> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
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diff
changeset
|
1058 </section> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1059 </when> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1060 <when value="SelectKBest"> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1061 <expand macro="feature_selection_score_function" /> |
16
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1062 <section name="options" title="Advanced Options" expanded="False"> |
8
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1063 <param argument="k" type="integer" value="10" optional="True" label="Number of top features to select" help="No 'all' option is supported." /> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1064 </section> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1065 </when> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1066 <when value="SelectFpr"> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1067 <expand macro="feature_selection_score_function" /> |
16
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1068 <section name="options" title="Advanced Options" expanded="False"> |
8
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1069 <param argument="alpha" type="float" value="" optional="True" label="Alpha" help="The highest p-value for features to be kept."/> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1070 </section> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1071 </when> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1072 <when value="SelectFdr"> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1073 <expand macro="feature_selection_score_function" /> |
16
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1074 <section name="options" title="Advanced Options" expanded="False"> |
8
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1075 <param argument="alpha" type="float" value="" optional="True" label="Alpha" help="The highest uncorrected p-value for features to keep."/> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1076 </section> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1077 </when> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1078 <when value="SelectFwe"> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1079 <expand macro="feature_selection_score_function" /> |
16
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1080 <section name="options" title="Advanced Options" expanded="False"> |
8
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1081 <param argument="alpha" type="float" value="" optional="True" label="Alpha" help="The highest uncorrected p-value for features to keep."/> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1082 </section> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1083 </when> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1084 <when value="RFE"> |
16
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1085 <expand macro="estimator_selector_all"/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1086 <section name="options" title="Advanced Options" expanded="False"> |
8
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1087 <param argument="n_features_to_select" type="integer" value="" optional="true" label="n_features_to_select" help="The number of features to select. If None, half of the features are selected." /> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1088 <param argument="step" type="float" value="1" label="step" optional="true" help="Default = 1. " /> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1089 <param argument="verbose" type="integer" value="0" label="verbose" help="Controls verbosity of output." /> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1090 </section> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1091 </when> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1092 <when value="RFECV"> |
16
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1093 <expand macro="estimator_selector_all"/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1094 <section name="options" title="Advanced Options" expanded="False"> |
8
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1095 <param argument="step" type="float" value="1" label="step" optional="true" help="Default = 1. " /> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1096 <param argument="cv" type="integer" value="" optional="true" label="cv" help="Determines the cross-validation splitting strategy" /> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1097 <param argument="scoring" type="text" value="" optional="true" label="scoring" help="A string (see model evaluation documentation) or a scorer callable object / function with signature scorer(estimator, X, y)."/> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1098 <param argument="verbose" type="integer" value="0" label="verbose" help="Controls verbosity of output." /> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1099 <param argument="n_jobs" type="integer" value="1" label="n_jobs" help="Number of cores to run in parallel while fitting across folds. Defaults to 1 core."/> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
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diff
changeset
|
1100 </section> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
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diff
changeset
|
1101 </when> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
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diff
changeset
|
1102 <when value="VarianceThreshold"> |
16
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
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diff
changeset
|
1103 <section name="options" title="Options" expanded="False"> |
8
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
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parents:
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diff
changeset
|
1104 <param argument="threshold" type="float" value="" optional="True" label="Threshold" help="Features with a training-set variance lower than this threshold will be removed."/> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1105 </section> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1106 </when> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1107 <!--when value="chi2"> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1108 </when> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1109 <when value="f_classif"> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1110 </when> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1111 <when value="f_regression"> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1112 </when> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1113 <when value="mutual_info_classif"> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1114 </when> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1115 <when value="mutual_info_regression"> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1116 </when--> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1117 </conditional> |
9a2ad992d048
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 79fe42239dcf077b13f85cbcd6c6e30d7e1e4832
bgruening
parents:
7
diff
changeset
|
1118 </xml> |
15
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
bgruening
parents:
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diff
changeset
|
1119 |
6
ef0df429fec4
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 7a31960686122d7e53054fef4996525f04ebd254
bgruening
parents:
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diff
changeset
|
1120 <xml name="feature_selection_score_function"> |
ef0df429fec4
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 7a31960686122d7e53054fef4996525f04ebd254
bgruening
parents:
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diff
changeset
|
1121 <param argument="score_func" type="select" label="Select a score function"> |
ef0df429fec4
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 7a31960686122d7e53054fef4996525f04ebd254
bgruening
parents:
5
diff
changeset
|
1122 <option value="chi2">chi2 - Compute chi-squared stats between each non-negative feature and class</option> |
ef0df429fec4
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 7a31960686122d7e53054fef4996525f04ebd254
bgruening
parents:
5
diff
changeset
|
1123 <option value="f_classif">f_classif - Compute the ANOVA F-value for the provided sample</option> |
ef0df429fec4
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 7a31960686122d7e53054fef4996525f04ebd254
bgruening
parents:
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diff
changeset
|
1124 <option value="f_regression">f_regression - Univariate linear regression tests</option> |
ef0df429fec4
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 7a31960686122d7e53054fef4996525f04ebd254
bgruening
parents:
5
diff
changeset
|
1125 <option value="mutual_info_classif">mutual_info_classif - Estimate mutual information for a discrete target variable</option> |
ef0df429fec4
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 7a31960686122d7e53054fef4996525f04ebd254
bgruening
parents:
5
diff
changeset
|
1126 <option value="mutual_info_regression">mutual_info_regression - Estimate mutual information for a continuous target variable</option> |
ef0df429fec4
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 7a31960686122d7e53054fef4996525f04ebd254
bgruening
parents:
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diff
changeset
|
1127 </param> |
ef0df429fec4
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 7a31960686122d7e53054fef4996525f04ebd254
bgruening
parents:
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diff
changeset
|
1128 </xml> |
15
c02c2bf137ab
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit f54ff2ba2f8e7542d68966ce5a6b17d7f624ac48
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parents:
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diff
changeset
|
1129 |
16
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
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diff
changeset
|
1130 <xml name="feature_selection_output_mothods"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
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parents:
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diff
changeset
|
1131 <conditional name="output_method_selector"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
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diff
changeset
|
1132 <param name="selected_method" type="select" label="Select an output method:"> |
6
ef0df429fec4
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 7a31960686122d7e53054fef4996525f04ebd254
bgruening
parents:
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diff
changeset
|
1133 <option value="fit_transform">fit_transform - Fit to data, then transform it</option> |
ef0df429fec4
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 7a31960686122d7e53054fef4996525f04ebd254
bgruening
parents:
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diff
changeset
|
1134 <option value="get_support">get_support - Get a mask, or integer index, of the features selected</option> |
ef0df429fec4
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 7a31960686122d7e53054fef4996525f04ebd254
bgruening
parents:
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diff
changeset
|
1135 </param> |
ef0df429fec4
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 7a31960686122d7e53054fef4996525f04ebd254
bgruening
parents:
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diff
changeset
|
1136 <when value="fit_transform"> |
ef0df429fec4
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 7a31960686122d7e53054fef4996525f04ebd254
bgruening
parents:
5
diff
changeset
|
1137 <!--**fit_params--> |
ef0df429fec4
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 7a31960686122d7e53054fef4996525f04ebd254
bgruening
parents:
5
diff
changeset
|
1138 </when> |
ef0df429fec4
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 7a31960686122d7e53054fef4996525f04ebd254
bgruening
parents:
5
diff
changeset
|
1139 <when value="get_support"> |
ef0df429fec4
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 7a31960686122d7e53054fef4996525f04ebd254
bgruening
parents:
5
diff
changeset
|
1140 <param name="indices" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="false" label="Indices" help="If True, the return value will be an array of integers, rather than a boolean mask."/> |
ef0df429fec4
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 7a31960686122d7e53054fef4996525f04ebd254
bgruening
parents:
5
diff
changeset
|
1141 </when> |
ef0df429fec4
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 7a31960686122d7e53054fef4996525f04ebd254
bgruening
parents:
5
diff
changeset
|
1142 </conditional> |
ef0df429fec4
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 7a31960686122d7e53054fef4996525f04ebd254
bgruening
parents:
5
diff
changeset
|
1143 </xml> |
0
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1144 |
7
8a42afda5083
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee
bgruening
parents:
6
diff
changeset
|
1145 <xml name="model_validation_common_options"> |
8a42afda5083
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee
bgruening
parents:
6
diff
changeset
|
1146 <param argument="cv" type="integer" value="" optional="true" label="cv" help="The number of folds in a (Stratified)KFold" /> |
8a42afda5083
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee
bgruening
parents:
6
diff
changeset
|
1147 <expand macro="n_jobs"/> |
8a42afda5083
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee
bgruening
parents:
6
diff
changeset
|
1148 <expand macro="verbose"/> |
8a42afda5083
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee
bgruening
parents:
6
diff
changeset
|
1149 <yield/> |
8a42afda5083
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee
bgruening
parents:
6
diff
changeset
|
1150 </xml> |
8a42afda5083
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee
bgruening
parents:
6
diff
changeset
|
1151 |
8a42afda5083
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee
bgruening
parents:
6
diff
changeset
|
1152 <xml name="scoring"> |
8a42afda5083
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee
bgruening
parents:
6
diff
changeset
|
1153 <param argument="scoring" type="text" value="" optional="true" label="scoring" help="A metric used to evaluate the estimator"/> |
8a42afda5083
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee
bgruening
parents:
6
diff
changeset
|
1154 </xml> |
8a42afda5083
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee
bgruening
parents:
6
diff
changeset
|
1155 |
16
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1156 <xml name="pre_dispatch" token_type="hidden" token_default_value="all" token_help="Number of predispatched jobs for parallel execution"> |
9
049c8e817869
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 4ed8c4f6ef9ece81797a398b17a99bbaf49a6978
bgruening
parents:
8
diff
changeset
|
1157 <param argument="pre_dispatch" type="@TYPE@" value="@DEFAULT_VALUE@" optional="true" label="pre_dispatch" help="@HELP@"/> |
7
8a42afda5083
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee
bgruening
parents:
6
diff
changeset
|
1158 </xml> |
8a42afda5083
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 2e1e78576b38110cf5b1f2ed83b08b9c3a6cbfee
bgruening
parents:
6
diff
changeset
|
1159 |
16
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1160 <xml name="search_cv_estimator"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1161 <param name="infile_pipeline" type="data" format="zip" label="Choose the dataset containing pipeline object:"/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1162 <section name="search_params_builder" title="Search parameters Builder" expanded="true"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1163 <repeat name="param_set" min="1" max="20" title="Parameter setting for search:"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1164 <conditional name="search_param_selector"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1165 <param name="selected_param_type" type="select" label="Choose the transformation the parameter belongs to"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1166 <option value="final_estimator_p" selected="true">Final estimator</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1167 <option value="prep_1_p">Pre-processing step #1</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1168 <option value="prep_2_p">Pre-processing step #2</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1169 <option value="prep_3_p">Pre-processing step #3</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1170 <option value="prep_4_p">Pre-processing step #4</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1171 <option value="prep_5_p">Pre-processing step #5</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1172 </param> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1173 <when value="final_estimator_p"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1174 <expand macro="search_param_input" /> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1175 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1176 <when value="prep_1_p"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1177 <expand macro="search_param_input" label="Pre_processing component #1 parameter:" help="One parameter per box. For example: with_centering: [True, False]."/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1178 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1179 <when value="prep_2_p"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1180 <expand macro="search_param_input" label="Pre_processing component #2 parameter:" help="One parameter per box. For example: k: [3, 5, 7, 9]. See bottom for more examples"/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1181 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1182 <when value="prep_3_p"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1183 <expand macro="search_param_input" label="Pre_processing component #3 parameter:" help="One parameter per box. For example: n_components: [1, 10, 100, 1000]. See bottom for more examples"/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1184 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1185 <when value="prep_4_p"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1186 <expand macro="search_param_input" label="Pre_processing component #4 parameter:" help="One parameter per box. For example: n_components: [1, 10, 100, 1000]. See bottom for more examples"/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1187 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1188 <when value="prep_5_p"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1189 <expand macro="search_param_input" label="Pre_processing component #5 parameter:" help="One parameter per box. For example: affinity: ['euclidean', 'l1', 'l2', 'manhattan']. See bottom for more examples"/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1190 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1191 </conditional> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1192 </repeat> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
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diff
changeset
|
1193 </section> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
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diff
changeset
|
1194 </xml> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1195 |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1196 <xml name="search_param_input" token_label="Estimator parameter:" token_help="One parameter per box. For example: C: [1, 10, 100, 1000]. See bottom for more examples"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1197 <param name="search_p" type="text" value="" size="100" optional="true" label="@LABEL@" help="@HELP@"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1198 <sanitizer> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
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diff
changeset
|
1199 <valid initial="default"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
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diff
changeset
|
1200 <add value="'"/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
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diff
changeset
|
1201 <add value="""/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
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diff
changeset
|
1202 <add value="["/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1203 <add value="]"/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
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diff
changeset
|
1204 </valid> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
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diff
changeset
|
1205 </sanitizer> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
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diff
changeset
|
1206 </param> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
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diff
changeset
|
1207 </xml> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
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diff
changeset
|
1208 |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1209 <xml name="search_cv_options"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
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diff
changeset
|
1210 <expand macro="scoring"/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
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diff
changeset
|
1211 <expand macro="model_validation_common_options"/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1212 <expand macro="pre_dispatch" value="2*n_jobs" help="Controls the number of jobs that get dispatched during parallel execution"/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
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diff
changeset
|
1213 <param argument="iid" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="true" label="iid" help="If True, data is identically distributed across the folds"/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
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diff
changeset
|
1214 <param argument="refit" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="true" label="refit" help="Refit an estimator using the best found parameters on the whole dataset."/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1215 <!--error_score--> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1216 <param argument="return_train_score" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="false" label="return_train_score" help=""/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1217 </xml> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1218 |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1219 <xml name="estimator_selector_all"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1220 <conditional name="estimator_selector"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1221 <param name="selected_module" type="select" label="Choose the module that contains target estimator:" > |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1222 <option value="svm" selected="true">sklearn.svm</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1223 <option value="linear_model">sklearn.linear_model</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1224 <option value="ensemble">sklearn.ensemble</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1225 <option value="naive_bayes">sklearn.naive_bayes</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1226 <option value="tree">sklearn.tree</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1227 <option value="neighbors">sklearn.neighbors</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1228 <option value="xgboost">xgboost</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1229 <!--more--> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1230 </param> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1231 <when value="svm"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1232 <param name="selected_estimator" type="select" label="Choose estimator class:"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1233 <option value="LinearSVC" selected="true">LinearSVC</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1234 <option value="LinearSVR">LinearSVR</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1235 <option value="NuSVC">NuSVC</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1236 <option value="NuSVR">NuSVR</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1237 <option value="OneClassSVM">OneClassSVM</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1238 <option value="SVC">SVC</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1239 <option value="SVR">SVR</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1240 </param> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1241 <expand macro="estimator_params_text"/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1242 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1243 <when value="linear_model"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1244 <param name="selected_estimator" type="select" label="Choose estimator class:"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1245 <option value="ARDRegression" selected="true">ARDRegression</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1246 <option value="BayesianRidge">BayesianRidge</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1247 <option value="ElasticNet">ElasticNet</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1248 <option value="ElasticNetCV">ElasticNetCV</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1249 <option value="HuberRegressor">HuberRegressor</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1250 <option value="Lars">Lars</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1251 <option value="LarsCV">LarsCV</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1252 <option value="Lasso">Lasso</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1253 <option value="LassoCV">LassoCV</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1254 <option value="LassoLars">LassoLars</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1255 <option value="LassoLarsCV">LassoLarsCV</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1256 <option value="LassoLarsIC">LassoLarsIC</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1257 <option value="LinearRegression">LinearRegression</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1258 <option value="LogisticRegression">LogisticRegression</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1259 <option value="LogisticRegressionCV">LogisticRegressionCV</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1260 <option value="MultiTaskLasso">MultiTaskLasso</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1261 <option value="MultiTaskElasticNet">MultiTaskElasticNet</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1262 <option value="MultiTaskLassoCV">MultiTaskLassoCV</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1263 <option value="MultiTaskElasticNetCV">MultiTaskElasticNetCV</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1264 <option value="OrthogonalMatchingPursuit">OrthogonalMatchingPursuit</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1265 <option value="OrthogonalMatchingPursuitCV">OrthogonalMatchingPursuitCV</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1266 <option value="PassiveAggressiveClassifier">PassiveAggressiveClassifier</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1267 <option value="PassiveAggressiveRegressor">PassiveAggressiveRegressor</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1268 <option value="Perceptron">Perceptron</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1269 <option value="RANSACRegressor">RANSACRegressor</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1270 <option value="Ridge">Ridge</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1271 <option value="RidgeClassifier">RidgeClassifier</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1272 <option value="RidgeClassifierCV">RidgeClassifierCV</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1273 <option value="RidgeCV">RidgeCV</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1274 <option value="SGDClassifier">SGDClassifier</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1275 <option value="SGDRegressor">SGDRegressor</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1276 <option value="TheilSenRegressor">TheilSenRegressor</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1277 </param> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1278 <expand macro="estimator_params_text"/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1279 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1280 <when value="ensemble"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1281 <param name="selected_estimator" type="select" label="Choose estimator class:"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1282 <option value="AdaBoostClassifier" selected="true">AdaBoostClassifier</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1283 <option value="AdaBoostRegressor">AdaBoostRegressor</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1284 <option value="BaggingClassifier">BaggingClassifier</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1285 <option value="BaggingRegressor">BaggingRegressor</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1286 <option value="ExtraTreesClassifier">ExtraTreesClassifier</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1287 <option value="ExtraTreesRegressor">ExtraTreesRegressor</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1288 <option value="GradientBoostingClassifier">GradientBoostingClassifier</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1289 <option value="GradientBoostingRegressor">GradientBoostingRegressor</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1290 <option value="IsolationForest">IsolationForest</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1291 <option value="RandomForestClassifier">RandomForestClassifier</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1292 <option value="RandomForestRegressor">RandomForestRegressor</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1293 <option value="RandomTreesEmbedding">RandomTreesEmbedding</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1294 <option value="VotingClassifier">VotingClassifier</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1295 </param> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1296 <expand macro="estimator_params_text"/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1297 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1298 <when value="naive_bayes"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1299 <param name="selected_estimator" type="select" label="Choose estimator class:"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1300 <option value="BernoulliNB" selected="true">BernoulliNB</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1301 <option value="GaussianNB">GaussianNB</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1302 <option value="MultinomialNB">MultinomialNB</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1303 </param> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1304 <expand macro="estimator_params_text"/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1305 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1306 <when value="tree"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1307 <param name="selected_estimator" type="select" label="Choose estimator class:"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1308 <option value="DecisionTreeClassifier" selected="true">DecisionTreeClassifier</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1309 <option value="DecisionTreeRegressor">DecisionTreeRegressor</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1310 <option value="ExtraTreeClassifier">ExtraTreeClassifier</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1311 <option value="ExtraTreeRegressor">ExtraTreeRegressor</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1312 </param> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1313 <expand macro="estimator_params_text"/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1314 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1315 <when value="neighbors"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1316 <param name="selected_estimator" type="select" label="Choose estimator class:"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1317 <option value="BallTree" selected="true">BallTree</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1318 <option value="DistanceMetric">DistanceMetric</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1319 <option value="KDTree">KDTree</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1320 <option value="KernelDensity">KernelDensity</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1321 <option value="KNeighborsClassifier">KNeighborsClassifier</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1322 <option value="KNeighborsRegressor">KNeighborsRegressor</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1323 <option value="LocalOutlierFactor">LocalOutlierFactor</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1324 <option value="RadiusNeighborsClassifier">RadiusNeighborsClassifier</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1325 <option value="RadiusNeighborsRegressor">RadiusNeighborsRegressor</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1326 <option value="NearestCentroid">NearestCentroid</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1327 <option value="NearestNeighbors">NearestNeighbors</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1328 </param> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1329 <expand macro="estimator_params_text"/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1330 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1331 <when value="xgboost"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1332 <param name="selected_estimator" type="select" label="Choose estimator class:"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1333 <option value="XGBRegressor" selected="true">XGBRegressor</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1334 <option value="XGBClassifier">XGBClassifier</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1335 </param> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1336 <expand macro="estimator_params_text"/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1337 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1338 </conditional> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1339 </xml> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1340 |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1341 <xml name="estimator_params_text" token_label="Type in estimator parameters:" |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1342 token_help="Parameters in dictionary without braces ('{}'), e.g., 'C': 1, 'kernel': 'linear'. No double quotes. Leave this box blank for default estimator."> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1343 <param name="text_params" type="text" value="" size="50" optional="true" label="@LABEL@" help="@HELP@"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1344 <sanitizer> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1345 <valid initial="default"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1346 <add value="'"/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1347 </valid> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1348 </sanitizer> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1349 </param> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1350 </xml> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1351 |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1352 <xml name="kernel_approximation_all"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1353 <conditional name="kernel_approximation_selector"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1354 <param name="select_algorithm" type="select" label="Choose a kernel approximation algorithm:"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1355 <option value="Nystroem" selected="true">Nystroem</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1356 <option value="RBFSampler">RBFSampler</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1357 <option value="AdditiveChi2Sampler">AdditiveChi2Sampler</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1358 <option value="SkewedChi2Sampler">SkewedChi2Sampler</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1359 </param> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1360 <when value="Nystroem"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1361 <expand macro="estimator_params_text" label="Type in kernel approximater parameters:" |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1362 help="Parameters in dictionary without braces ('{}'), e.g., 'n_components': 100, 'kernel': 'rbf'. No double quotes. Leave this box blank for class default."/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1363 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1364 <when value="RBFSampler"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1365 <expand macro="estimator_params_text" label="Type in kernel approximater parameters:" |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1366 help="Parameters in dictionary without braces ('{}'), e.g., 'n_components': 100, 'gamma': 1.0. No double quotes. Leave this box blank for class default."/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1367 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1368 <when value="AdditiveChi2Sampler"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1369 <expand macro="estimator_params_text" label="Type in kernel approximater parameters:" |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1370 help="Parameters in dictionary without braces ('{}'), e.g., 'sample_steps': 2, 'sample_interval': None. No double quotes. Leave this box blank for class default."/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1371 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1372 <when value="SkewedChi2Sampler"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1373 <expand macro="estimator_params_text" label="Type in kernel approximater parameters:" |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1374 help="Parameters in dictionary without braces ('{}'), e.g., 'n_components': 100, 'skewedness': 1.0. No double quotes. Leave this box blank for class default."/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1375 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1376 </conditional> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1377 </xml> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1378 |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1379 <xml name="matrix_decomposition_all"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1380 <conditional name="matrix_decomposition_selector"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1381 <param name="select_algorithm" type="select" label="Choose a matrix decomposition algorithm:"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1382 <option value="DictionaryLearning" selected="true">DictionaryLearning</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1383 <option value="FactorAnalysis">FactorAnalysis</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1384 <option value="FastICA">FastICA</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1385 <option value="IncrementalPCA">IncrementalPCA</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1386 <option value="KernelPCA">KernelPCA</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1387 <option value="LatentDirichletAllocation">LatentDirichletAllocation</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1388 <option value="MiniBatchDictionaryLearning">MiniBatchDictionaryLearning</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1389 <option value="MiniBatchSparsePCA">MiniBatchSparsePCA</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1390 <option value="NMF">NMF</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1391 <option value="PCA">PCA</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1392 <option value="SparsePCA">SparsePCA</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1393 <option value="SparseCoder">SparseCoder</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1394 <option value="TruncatedSVD">TruncatedSVD</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1395 </param> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1396 <when value="DictionaryLearning"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1397 <expand macro="estimator_params_text" label="Type in maxtrix decomposition parameters:" |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1398 help="Parameters in dictionary without braces ('{}'), e.g., 'n_components': None, 'alpha': 1.0. No double quotes. Leave this box blank for class default."/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1399 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1400 <when value="FactorAnalysis"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1401 <expand macro="estimator_params_text" label="Type in maxtrix decomposition parameters:" |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1402 help="Parameters in dictionary without braces ('{}'), e.g., 'n_components': 100, 'random_state': 42. No double quotes. Leave this box blank for class default."/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1403 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1404 <when value="FastICA"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1405 <expand macro="estimator_params_text" label="Type in maxtrix decomposition parameters:" |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1406 help="Parameters in dictionary without braces ('{}'), e.g., 'n_components': 100, 'random_state': 42. No double quotes. Leave this box blank for class default."/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1407 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1408 <when value="IncrementalPCA"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1409 <expand macro="estimator_params_text" label="Type in maxtrix decomposition parameters:" |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1410 help="Parameters in dictionary without braces ('{}'), e.g., 'n_components': 100, 'whiten': False. No double quotes. Leave this box blank for class default."/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1411 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1412 <when value="KernelPCA"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1413 <expand macro="estimator_params_text" label="Type in maxtrix decomposition parameters:" |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1414 help="Parameters in dictionary without braces ('{}'), e.g., 'n_components': 100, 'random_state': 42. No double quotes. Leave this box blank for class default."/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1415 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1416 <when value="LatentDirichletAllocation"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1417 <expand macro="estimator_params_text" label="Type in maxtrix decomposition parameters:" |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1418 help="Parameters in dictionary without braces ('{}'), e.g., 'n_components': 100, 'random_state': 42. No double quotes. Leave this box blank for class default."/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1419 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1420 <when value="MiniBatchDictionaryLearning"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1421 <expand macro="estimator_params_text" label="Type in maxtrix decomposition parameters:" |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1422 help="Parameters in dictionary without braces ('{}'), e.g., 'n_components': 100, 'random_state': 42. No double quotes. Leave this box blank for class default."/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1423 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1424 <when value="MiniBatchSparsePCA"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1425 <expand macro="estimator_params_text" label="Type in maxtrix decomposition parameters:" |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1426 help="Parameters in dictionary without braces ('{}'), e.g., 'n_components': 100, 'random_state': 42. No double quotes. Leave this box blank for class default."/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1427 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1428 <when value="NMF"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1429 <expand macro="estimator_params_text" label="Type in maxtrix decomposition parameters:" |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1430 help="Parameters in dictionary without braces ('{}'), e.g., 'n_components': 100, 'init': 'random'. No double quotes. Leave this box blank for class default."/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1431 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1432 <when value="PCA"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1433 <expand macro="estimator_params_text" label="Type in maxtrix decomposition parameters:" |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1434 help="Parameters in dictionary without braces ('{}'), e.g., 'n_components': 100, 'random_state': 42. No double quotes. Leave this box blank for class default."/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1435 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1436 <when value="SparsePCA"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1437 <expand macro="estimator_params_text" label="Type in maxtrix decomposition parameters:" |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1438 help="Parameters in dictionary without braces ('{}'), e.g., 'n_components': 100, 'random_state': 42. No double quotes. Leave this box blank for class default."/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1439 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1440 <when value="SparseCoder"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1441 <expand macro="estimator_params_text" label="Type in maxtrix decomposition parameters:" |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1442 help="Parameters in dictionary without braces ('{}'), e.g., 'transform_algorithm': 'omp', 'transform_alpha': 1.0. No double quotes. Leave this box blank for class default."/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1443 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1444 <when value="TruncatedSVD"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1445 <expand macro="estimator_params_text" label="Type in maxtrix decomposition parameters:" |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1446 help="Parameters in dictionary without braces ('{}'), e.g., 'n_components': 2, 'algorithm': 'randomized'. No double quotes. Leave this box blank for default estimator."/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1447 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1448 </conditional> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1449 </xml> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1450 |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1451 <xml name="FeatureAgglomeration"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1452 <conditional name="FeatureAgglomeration_selector"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1453 <param name="select_algorithm" type="select" label="Choose the algorithm:"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1454 <option value="FeatureAgglomeration" selected="true">FeatureAgglomeration</option> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1455 </param> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1456 <when value="FeatureAgglomeration"> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1457 <expand macro="estimator_params_text" label="Type in parameters:" |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1458 help="Parameters in dictionary without braces ('{}'), e.g., 'n_clusters': 2, 'affinity': 'euclidean'. No double quotes. Leave this box blank for class default."/> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1459 </when> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1460 </conditional> |
18ac21927d3d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 76583c1fcd9d06a4679cc46ffaee44117b9e22cd
bgruening
parents:
15
diff
changeset
|
1461 </xml> |
0
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1462 <!-- Outputs --> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1463 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1464 <xml name="output"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1465 <outputs> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1466 <data format="tabular" name="outfile_predict"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1467 <filter>selected_tasks['selected_task'] == 'load'</filter> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1468 </data> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1469 <data format="zip" name="outfile_fit"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1470 <filter>selected_tasks['selected_task'] == 'train'</filter> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1471 </data> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1472 </outputs> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1473 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1474 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1475 <!--Citations--> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1476 <xml name="eden_citation"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1477 <citations> |
3
bf0ea4cece8b
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 99231ce3ef238975a6614926f2fa6326b9454ee8
bgruening
parents:
2
diff
changeset
|
1478 <citation type="doi">10.5281/zenodo.15094</citation> |
0
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1479 </citations> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1480 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1481 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1482 <xml name="sklearn_citation"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1483 <citations> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1484 <citation type="bibtex"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1485 @article{scikit-learn, |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1486 title={Scikit-learn: Machine Learning in {P}ython}, |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1487 author={Pedregosa, F. and Varoquaux, G. and Gramfort, A. and Michel, V. |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1488 and Thirion, B. and Grisel, O. and Blondel, M. and Prettenhofer, P. |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1489 and Weiss, R. and Dubourg, V. and Vanderplas, J. and Passos, A. and |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1490 Cournapeau, D. and Brucher, M. and Perrot, M. and Duchesnay, E.}, |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1491 journal={Journal of Machine Learning Research}, |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1492 volume={12}, |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1493 pages={2825--2830}, |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1494 year={2011} |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1495 url = {https://github.com/scikit-learn/scikit-learn} |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1496 } |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1497 </citation> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1498 </citations> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1499 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1500 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1501 <xml name="scipy_citation"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1502 <citations> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1503 <citation type="bibtex"> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1504 @Misc{, |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1505 author = {Eric Jones and Travis Oliphant and Pearu Peterson and others}, |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1506 title = {{SciPy}: Open source scientific tools for {Python}}, |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1507 year = {2001--}, |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1508 url = "http://www.scipy.org/", |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1509 note = {[Online; accessed 2016-04-09]} |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1510 } |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1511 </citation> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1512 </citations> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1513 </xml> |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1514 |
dec5e182fd0c
planemo upload for repository https://github.com/bgruening/galaxytools/tools/sklearn commit 0e582cf1f3134c777cce3aa57d71b80ed95e6ba9
bgruening
parents:
diff
changeset
|
1515 </macros> |