annotate test-data/keras02.json @ 22:f0d2e8a3c575 draft

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit d970dae980fbe349414fc0889f719d875d999c5b"
author bgruening
date Fri, 27 Aug 2021 10:12:49 +0000
parents c1ca24a1509d
children fc99237f3392
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15
c1ca24a1509d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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1 {
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2 "class_name": "Model",
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3 "config": {
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4 "name": "model_1",
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5 "layers": [
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6 {
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7 "name": "main_input",
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8 "class_name": "InputLayer",
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9 "config": {
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10 "batch_input_shape": [
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12 100
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13 ],
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14 "dtype": "int32",
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15 "sparse": false,
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16 "name": "main_input"
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17 },
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18 "inbound_nodes": []
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19 },
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20 {
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21 "name": "embedding_1",
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22 "class_name": "Embedding",
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23 "config": {
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24 "name": "embedding_1",
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25 "trainable": true,
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26 "batch_input_shape": [
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27 null,
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29 ],
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30 "dtype": "float32",
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31 "input_dim": 10000,
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32 "output_dim": 512,
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33 "embeddings_initializer": {
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34 "class_name": "RandomUniform",
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35 "config": {
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36 "minval": -0.05,
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37 "maxval": 0.05,
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38 "seed": null
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39 }
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40 },
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41 "embeddings_regularizer": null,
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42 "activity_regularizer": null,
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43 "embeddings_constraint": null,
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44 "mask_zero": false,
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45 "input_length": 100
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46 },
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47 "inbound_nodes": [
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48 [
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49 [
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50 "main_input",
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51 0,
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52 0,
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53 {}
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54 ]
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55 ]
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56 ]
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57 },
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58 {
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59 "name": "lstm_1",
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60 "class_name": "LSTM",
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61 "config": {
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62 "name": "lstm_1",
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63 "trainable": true,
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64 "dtype": "float32",
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65 "return_sequences": false,
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66 "return_state": false,
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67 "go_backwards": false,
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68 "stateful": false,
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69 "unroll": false,
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70 "units": 32,
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71 "activation": "tanh",
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72 "recurrent_activation": "sigmoid",
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73 "use_bias": true,
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74 "kernel_initializer": {
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75 "class_name": "VarianceScaling",
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76 "config": {
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77 "scale": 1.0,
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78 "mode": "fan_avg",
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79 "distribution": "uniform",
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80 "seed": null
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81 }
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82 },
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83 "recurrent_initializer": {
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84 "class_name": "Orthogonal",
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85 "config": {
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86 "gain": 1.0,
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87 "seed": null
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88 }
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89 },
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90 "bias_initializer": {
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91 "class_name": "Zeros",
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92 "config": {}
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93 },
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94 "unit_forget_bias": true,
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95 "kernel_regularizer": null,
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96 "recurrent_regularizer": null,
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97 "bias_regularizer": null,
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98 "activity_regularizer": null,
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99 "kernel_constraint": null,
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100 "recurrent_constraint": null,
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101 "bias_constraint": null,
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102 "dropout": 0.0,
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103 "recurrent_dropout": 0.0,
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104 "implementation": 2
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105 },
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106 "inbound_nodes": [
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107 [
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108 [
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109 "embedding_1",
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110 0,
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111 0,
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112 {}
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113 ]
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114 ]
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116 },
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117 {
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118 "name": "dense_1",
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119 "class_name": "Dense",
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120 "config": {
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121 "name": "dense_1",
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122 "trainable": true,
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123 "dtype": "float32",
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124 "units": 1,
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125 "activation": "sigmoid",
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126 "use_bias": true,
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127 "kernel_initializer": {
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128 "class_name": "VarianceScaling",
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129 "config": {
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130 "scale": 1.0,
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131 "mode": "fan_avg",
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132 "distribution": "uniform",
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133 "seed": null
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134 }
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135 },
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136 "bias_initializer": {
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137 "class_name": "Zeros",
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138 "config": {}
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139 },
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140 "kernel_regularizer": null,
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141 "bias_regularizer": null,
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142 "activity_regularizer": null,
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143 "kernel_constraint": null,
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144 "bias_constraint": null
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145 },
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146 "inbound_nodes": [
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149 "lstm_1",
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156 },
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157 {
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158 "name": "aux_input",
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159 "class_name": "InputLayer",
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161 "batch_input_shape": [
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164 ],
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165 "dtype": "float32",
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169 "inbound_nodes": []
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170 },
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172 "name": "concatenate_1",
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175 "name": "concatenate_1",
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176 "trainable": true,
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177 "dtype": "float32",
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178 "axis": -1
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179 },
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180 "inbound_nodes": [
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188 [
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189 "aux_input",
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bgruening
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190 0,
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191 0,
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192 {}
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193 ]
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194 ]
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195 ]
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196 },
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197 {
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198 "name": "dense_2",
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199 "class_name": "Dense",
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200 "config": {
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bgruening
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201 "name": "dense_2",
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202 "trainable": true,
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bgruening
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203 "dtype": "float32",
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bgruening
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204 "units": 64,
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bgruening
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205 "activation": "relu",
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bgruening
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206 "use_bias": true,
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bgruening
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207 "kernel_initializer": {
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bgruening
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208 "class_name": "VarianceScaling",
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bgruening
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209 "config": {
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bgruening
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210 "scale": 1.0,
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bgruening
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211 "mode": "fan_avg",
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bgruening
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212 "distribution": "uniform",
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bgruening
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213 "seed": null
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bgruening
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214 }
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bgruening
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diff changeset
215 },
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bgruening
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diff changeset
216 "bias_initializer": {
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bgruening
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217 "class_name": "Zeros",
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bgruening
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218 "config": {}
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219 },
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bgruening
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220 "kernel_regularizer": null,
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bgruening
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221 "bias_regularizer": null,
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bgruening
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222 "activity_regularizer": null,
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bgruening
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223 "kernel_constraint": null,
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bgruening
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224 "bias_constraint": null
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225 },
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bgruening
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226 "inbound_nodes": [
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227 [
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228 [
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229 "concatenate_1",
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230 0,
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231 0,
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232 {}
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233 ]
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234 ]
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235 ]
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236 },
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bgruening
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237 {
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238 "name": "dense_3",
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239 "class_name": "Dense",
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bgruening
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240 "config": {
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bgruening
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241 "name": "dense_3",
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bgruening
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242 "trainable": true,
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bgruening
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243 "dtype": "float32",
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bgruening
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244 "units": 64,
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bgruening
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245 "activation": "relu",
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bgruening
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246 "use_bias": true,
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bgruening
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247 "kernel_initializer": {
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bgruening
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248 "class_name": "VarianceScaling",
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bgruening
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249 "config": {
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250 "scale": 1.0,
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bgruening
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251 "mode": "fan_avg",
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bgruening
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252 "distribution": "uniform",
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253 "seed": null
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254 }
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255 },
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256 "bias_initializer": {
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257 "class_name": "Zeros",
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258 "config": {}
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259 },
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260 "kernel_regularizer": null,
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261 "bias_regularizer": null,
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262 "activity_regularizer": null,
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263 "kernel_constraint": null,
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264 "bias_constraint": null
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265 },
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266 "inbound_nodes": [
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267 [
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268 [
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269 "dense_2",
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272 {}
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276 },
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277 {
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278 "name": "dense_4",
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279 "class_name": "Dense",
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280 "config": {
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281 "name": "dense_4",
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282 "trainable": true,
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283 "dtype": "float32",
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284 "units": 64,
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bgruening
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diff changeset
285 "activation": "relu",
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bgruening
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286 "use_bias": true,
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bgruening
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287 "kernel_initializer": {
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288 "class_name": "VarianceScaling",
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bgruening
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289 "config": {
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290 "scale": 1.0,
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291 "mode": "fan_avg",
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bgruening
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292 "distribution": "uniform",
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bgruening
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293 "seed": null
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294 }
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bgruening
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295 },
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296 "bias_initializer": {
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297 "class_name": "Zeros",
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298 "config": {}
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299 },
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300 "kernel_regularizer": null,
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301 "bias_regularizer": null,
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302 "activity_regularizer": null,
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303 "kernel_constraint": null,
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304 "bias_constraint": null
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305 },
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306 "inbound_nodes": [
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307 [
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308 [
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309 "dense_3",
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310 0,
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312 {}
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316 },
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317 {
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318 "name": "dense_5",
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319 "class_name": "Dense",
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320 "config": {
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321 "name": "dense_5",
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322 "trainable": true,
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323 "dtype": "float32",
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324 "units": 1,
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325 "activation": "sigmoid",
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326 "use_bias": true,
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327 "kernel_initializer": {
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328 "class_name": "VarianceScaling",
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329 "config": {
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330 "scale": 1.0,
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331 "mode": "fan_avg",
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332 "distribution": "uniform",
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333 "seed": null
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334 }
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335 },
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336 "bias_initializer": {
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337 "class_name": "Zeros",
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338 "config": {}
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339 },
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340 "kernel_regularizer": null,
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341 "bias_regularizer": null,
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342 "activity_regularizer": null,
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343 "kernel_constraint": null,
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344 "bias_constraint": null
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345 },
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346 "inbound_nodes": [
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diff changeset
379 0
c1ca24a1509d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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380 ]
c1ca24a1509d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
bgruening
parents: 11
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381 ]
c1ca24a1509d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
bgruening
parents: 11
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382 },
c1ca24a1509d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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383 "keras_version": "2.3.1",
c1ca24a1509d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
bgruening
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384 "backend": "tensorflow"
c1ca24a1509d "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
bgruening
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385 }