Mercurial > repos > bgruening > sklearn_svm_classifier
diff svm.xml @ 8:1a9d5a8fff12 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit c0a3a186966888e5787335a7628bf0a4382637e7
author | bgruening |
---|---|
date | Tue, 14 May 2019 18:03:50 -0400 |
parents | 1c5989b930e3 |
children | 153f237ddb36 |
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--- a/svm.xml Sun Dec 30 01:50:39 2018 -0500 +++ b/svm.xml Tue May 14 18:03:50 2019 -0400 @@ -19,10 +19,10 @@ import json import sklearn.svm import pandas +import pickle -with open("$__tool_directory__/sk_whitelist.json", "r") as f: - sk_whitelist = json.load(f) -exec(open("$__tool_directory__/utils.py").read(), globals()) +sys.path.insert(0, '$__tool_directory__') +from utils import load_model, get_X_y input_json_path = sys.argv[1] with open(input_json_path, "r") as param_handler: @@ -43,7 +43,7 @@ #else: -X, y = get_X_y(params, "$selected_tasks.selected_algorithms.input_options.infile1" ,"$selected_tasks.selected_algorithms.input_options.infile2") +X, y = get_X_y(params, "$selected_tasks.selected_algorithms.input_options.infile1", "$selected_tasks.selected_algorithms.input_options.infile2") options = params["selected_tasks"]["selected_algorithms"]["options"] selected_algorithm = params["selected_tasks"]["selected_algorithms"]["selected_algorithm"]