Mercurial > repos > bgruening > sklearn_train_test_eval
annotate main_macros.xml @ 16:8b822484debc draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
author | bgruening |
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date | Wed, 09 Aug 2023 14:53:46 +0000 |
parents | 2eb5c017958d |
children | f12383ee3234 |
rev | line source |
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0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1 <macros> |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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2 <token name="@VERSION@">1.0.10.0</token> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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3 <token name="@PROFILE@">21.05</token> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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4 |
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ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
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5 <xml name="python_requirements"> |
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
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6 <requirements> |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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7 <requirement type="package" version="3.9">python</requirement> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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8 <requirement type="package" version="0.10.0">galaxy-ml</requirement> |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
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9 <yield /> |
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
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10 </requirements> |
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
parents:
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11 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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12 |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
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13 <xml name="macro_stdio"> |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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14 <stdio> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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15 <exit_code range=":-1" level="fatal" description="Error occurred. Please check Tool Standard Error" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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16 <exit_code range="137" level="fatal_oom" description="Out of Memory" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
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17 <exit_code range="1:" level="fatal" description="Error occurred. Please check Tool Standard Error" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
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18 </stdio> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
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19 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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20 |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
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21 <!--Generic interface--> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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22 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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23 <xml name="sl_Conditional" token_train="tabular" token_data="tabular" token_model="txt"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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changeset
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24 <conditional name="selected_tasks"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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changeset
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25 <param name="selected_task" type="select" label="Select a Classification Task"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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26 <option value="train" selected="true">Train a model</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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changeset
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27 <option value="load">Load a model and predict</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
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28 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
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29 <when value="load"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
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30 <param name="infile_model" type="data" format="@MODEL@" label="Models" help="Select a model file." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
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31 <param name="infile_data" type="data" format="@DATA@" label="Data (tabular)" help="Select the dataset you want to classify." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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32 <param name="header" type="boolean" optional="True" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
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33 <conditional name="prediction_options"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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34 <param name="prediction_option" type="select" label="Select the type of prediction"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
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changeset
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35 <option value="predict">Predict class labels</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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36 <option value="advanced">Include advanced options</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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37 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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changeset
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38 <when value="predict"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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changeset
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39 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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changeset
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40 <when value="advanced"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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41 </when> |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
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42 </conditional> |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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changeset
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43 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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44 <when value="train"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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45 <conditional name="selected_algorithms"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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46 <yield /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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47 </conditional> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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48 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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49 </conditional> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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50 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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51 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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52 <xml name="advanced_section"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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53 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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54 <yield /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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55 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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56 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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57 |
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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58 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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59 <!--Generalized Linear Models--> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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60 <xml name="loss" token_help=" " token_select="false"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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61 <param argument="loss" type="select" label="Loss function" help="@HELP@"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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62 <option value="squared_loss" selected="@SELECT@">squared loss</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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63 <option value="huber">huber</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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64 <option value="epsilon_insensitive">epsilon insensitive</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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65 <option value="squared_epsilon_insensitive">squared epsilon insensitive</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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66 <yield /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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67 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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68 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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69 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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70 <xml name="penalty" token_help=" "> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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71 <param argument="penalty" type="select" label="Penalty (regularization term)" help="@HELP@"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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72 <option value="l2" selected="true">l2</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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73 <option value="l1">l1</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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74 <option value="elasticnet">elastic net</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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75 <option value="none">none</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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76 <yield /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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77 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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78 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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79 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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80 <xml name="l1_ratio" token_default_value="0.15" token_help=" "> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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81 <param argument="l1_ratio" type="float" value="@DEFAULT_VALUE@" label="Elastic Net mixing parameter" help="@HELP@" /> |
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82 </xml> |
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83 |
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84 <xml name="epsilon" token_default_value="0.1" token_help="Used if loss is ‘huber’, ‘epsilon_insensitive’, or ‘squared_epsilon_insensitive’. "> |
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85 <param argument="epsilon" type="float" value="@DEFAULT_VALUE@" label="Epsilon (epsilon-sensitive loss functions only)" help="@HELP@" /> |
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86 </xml> |
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87 |
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88 <xml name="learning_rate_s" token_help=" " token_selected1="false" token_selected2="false"> |
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89 <param argument="learning_rate" type="select" optional="true" label="Learning rate schedule" help="@HELP@"> |
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90 <option value="optimal" selected="@SELECTED1@">optimal</option> |
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91 <option value="constant">constant</option> |
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92 <option value="invscaling" selected="@SELECTED2@">inverse scaling</option> |
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93 <yield /> |
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94 </param> |
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95 </xml> |
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96 |
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97 <xml name="eta0" token_default_value="0.0" token_help="Used with ‘constant’ or ‘invscaling’ schedules. "> |
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98 <param argument="eta0" type="float" value="@DEFAULT_VALUE@" label="Initial learning rate" help="@HELP@" /> |
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99 </xml> |
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100 |
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101 <xml name="power_t" token_default_value="0.5" token_help=" "> |
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102 <param argument="power_t" type="float" value="@DEFAULT_VALUE@" label="Exponent for inverse scaling learning rate" help="@HELP@" /> |
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103 </xml> |
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104 |
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105 <xml name="normalize" token_checked="false" token_help=" "> |
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106 <param argument="normalize" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="@CHECKED@" label="Normalize samples before training" help=" " /> |
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107 </xml> |
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108 |
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109 <xml name="copy_X" token_checked="true" token_help=" "> |
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110 <param argument="copy_X" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="@CHECKED@" label="Use a copy of samples" help="If false, samples would be overwritten. " /> |
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111 </xml> |
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112 |
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113 <xml name="ridge_params"> |
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114 <expand macro="normalize" /> |
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115 <expand macro="alpha" default_value="1.0" /> |
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116 <expand macro="fit_intercept" /> |
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117 <expand macro="max_iter" default_value="" /> |
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118 <expand macro="tol" default_value="0.001" help_text="Precision of the solution. " /> |
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119 <!--class_weight--> |
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120 <expand macro="copy_X" /> |
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121 <param argument="solver" type="select" value="" label="Solver to use in the computational routines" help=" "> |
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122 <option value="auto" selected="true">auto</option> |
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123 <option value="svd">svd</option> |
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124 <option value="cholesky">cholesky</option> |
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125 <option value="lsqr">lsqr</option> |
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126 <option value="sparse_cg">sparse_cg</option> |
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127 <option value="sag">sag</option> |
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128 </param> |
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129 <expand macro="random_state" /> |
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130 </xml> |
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131 |
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132 <!--Ensemble methods--> |
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133 <xml name="n_estimators" token_default_value="10" token_help=" "> |
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134 <param argument="n_estimators" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Number of trees in the forest" help="@HELP@" /> |
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135 </xml> |
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136 |
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137 <xml name="max_depth" token_default_value="" token_help=" "> |
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138 <param argument="max_depth" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Maximum depth of the tree" help="@HELP@" /> |
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139 </xml> |
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140 |
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141 <xml name="min_samples_split" token_type="integer" token_default_value="2" token_help=" "> |
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142 <param argument="min_samples_split" type="@TYPE@" optional="true" value="@DEFAULT_VALUE@" label="Minimum number of samples required to split an internal node" help="@HELP@" /> |
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143 </xml> |
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144 |
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145 <xml name="min_samples_leaf" token_type="integer" token_default_value="1" token_label="Minimum number of samples in newly created leaves" token_help=" "> |
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146 <param argument="min_samples_leaf" type="@TYPE@" optional="true" value="@DEFAULT_VALUE@" label="@LABEL@" help="@HELP@" /> |
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147 </xml> |
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148 |
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149 <xml name="min_weight_fraction_leaf" token_default_value="0.0" token_help=" "> |
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150 <param argument="min_weight_fraction_leaf" type="float" optional="true" value="@DEFAULT_VALUE@" label="Minimum weighted fraction of the input samples required to be at a leaf node" help="@HELP@" /> |
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151 </xml> |
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152 |
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153 <xml name="max_leaf_nodes" token_default_value="" token_help=" "> |
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154 <param argument="max_leaf_nodes" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Maximum number of leaf nodes in best-first method" help="@HELP@" /> |
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155 </xml> |
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156 |
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157 <xml name="min_impurity_decrease" token_default_value="0" token_help=" "> |
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158 <param argument="min_impurity_decrease" type="float" value="@DEFAULT_VALUE@" optional="true" label="The threshold value of impurity for stopping node splitting" help="@HELP@" /> |
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159 </xml> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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160 |
15
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161 <xml name="bootstrap" token_checked="true" token_help=" "> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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162 <param argument="bootstrap" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="@CHECKED@" label="Use bootstrap samples for building trees." help="@HELP@" /> |
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163 </xml> |
0
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164 |
15
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165 <xml name="criterion" token_help=" "> |
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166 <param argument="criterion" type="select" label="Function to measure the quality of a split" help=" "> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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167 <option value="gini" selected="true">Gini impurity</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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168 <option value="entropy">Information gain</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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169 <yield /> |
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170 </param> |
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171 </xml> |
0
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172 |
15
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173 <xml name="criterion2" token_help=""> |
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174 <param argument="criterion" type="select" label="Function to measure the quality of a split" > |
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175 <option value="mse">mse - mean squared error</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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176 <option value="mae">mae - mean absolute error</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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177 <yield /> |
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178 </param> |
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179 </xml> |
0
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180 |
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181 <xml name="oob_score" token_checked="false" token_help=" "> |
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182 <param argument="oob_score" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="@CHECKED@" label="Use out-of-bag samples to estimate the generalization error" help="@HELP@" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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183 </xml> |
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184 |
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185 <xml name="max_features"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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186 <conditional name="select_max_features"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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187 <param argument="max_features" type="select" label="max_features"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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188 <option value="auto" selected="true">auto - max_features=n_features</option> |
2eb5c017958d
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189 <option value="sqrt">sqrt - max_features=sqrt(n_features)</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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190 <option value="log2">log2 - max_features=log2(n_features)</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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191 <option value="number_input">I want to type the number in or input None type</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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192 </param> |
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193 <when value="auto"> |
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194 </when> |
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195 <when value="sqrt"> |
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196 </when> |
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197 <when value="log2"> |
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198 </when> |
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199 <when value="number_input"> |
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200 <param name="num_max_features" type="float" value="" optional="true" label="Input max_features number:" help="If int, consider the number of features at each split; If float, then max_features is a percentage and int(max_features * n_features) features are considered at each split." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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201 </when> |
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202 </conditional> |
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203 </xml> |
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204 |
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205 <xml name="verbose" token_default_value="0" token_help="If 1 then it prints progress and performance once in a while. If greater than 1 then it prints progress and performance for every tree."> |
2eb5c017958d
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206 <param argument="verbose" type="integer" value="@DEFAULT_VALUE@" optional="true" label="Enable verbose output" help="@HELP@" /> |
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207 </xml> |
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208 |
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209 <xml name="learning_rate" token_default_value="1.0" token_help=" "> |
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210 <param argument="learning_rate" type="float" optional="true" value="@DEFAULT_VALUE@" label="Learning rate" help="@HELP@" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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211 </xml> |
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212 |
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213 <xml name="subsample" token_help=" "> |
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214 <param argument="subsample" type="float" value="1.0" optional="true" label="The fraction of samples to be used for fitting the individual base learners" help="@HELP@" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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215 </xml> |
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216 |
15
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217 <xml name="presort"> |
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218 <param argument="presort" type="select" label="Whether to presort the data to speed up the finding of best splits in fitting" > |
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219 <option value="auto" selected="true">auto</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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220 <option value="true">true</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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221 <option value="false">false</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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222 </param> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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223 </xml> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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224 |
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225 <!-- LightGBM --> |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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226 <xml name="feature_fraction" token_help="LightGBM will randomly select part of the features for each iteration (tree) if feature_fraction is smaller than 1.0. For example, if you set it to 0.8, LightGBM will select 80% of features before training each tree."> |
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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227 <param argument="feature_fraction" type="float" value="1.0" label="Proportion of features to train each tree" help="@HELP@" /> |
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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228 </xml> |
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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229 |
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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230 <xml name="lambda_l1" token_help=" "> |
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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231 <param argument="lambda_l1" type="float" value="0.0" label="L1 regularization" help="@HELP@" /> |
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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232 </xml> |
6
bde62c243b7e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 756f8be9c3cd437e131e6410cd625c24fe078e8c"
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233 |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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234 <xml name="lambda_l2" token_help=" "> |
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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235 <param argument="lambda_l2" type="float" value="0.0" label="L1 regularization" help="@HELP@" /> |
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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236 </xml> |
6
bde62c243b7e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 756f8be9c3cd437e131e6410cd625c24fe078e8c"
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237 |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
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238 <xml name="min_gain_to_split" token_help=" "> |
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
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239 <param argument="min_gain_to_split" type="float" value="0.0" label="Minimal gain to perform split" help="@HELP@" /> |
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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240 </xml> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 756f8be9c3cd437e131e6410cd625c24fe078e8c"
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241 |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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242 <xml name="min_child_weight" token_help="Minimal sum hessian in one leaf. It can be used to deal with over-fitting."> |
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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243 <param argument="min_child_weight" type="float" value="0.0" label="Minimal sum hessian in one leaf" help="@HELP@" /> |
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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244 </xml> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 756f8be9c3cd437e131e6410cd625c24fe078e8c"
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245 |
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246 <!--Parameters--> |
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247 <xml name="tol" token_default_value="0.0" token_help_text="Early stopping heuristics based on the relative center changes. Set to default (0.0) to disable this convergence detection."> |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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248 <param argument="tol" type="float" optional="true" value="@DEFAULT_VALUE@" label="Tolerance" help="@HELP_TEXT@" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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249 </xml> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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250 |
15
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251 <xml name="n_clusters" token_default_value="8"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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252 <param argument="n_clusters" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Number of clusters" help=" " /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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253 </xml> |
0
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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254 |
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255 <xml name="fit_intercept" token_checked="true"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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256 <param argument="fit_intercept" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="@CHECKED@" label="Estimate the intercept" help="If false, the data is assumed to be already centered." /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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257 </xml> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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258 |
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259 <xml name="n_iter_no_change" token_default_value="5" token_help_text="Number of iterations with no improvement to wait before early stopping. "> |
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260 <param argument="n_iter_no_change" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Number of iterations" help="@HELP_TEXT@" /> |
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261 </xml> |
0
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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262 |
15
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263 <xml name="shuffle" token_checked="true" token_help_text=" " token_label="Shuffle data after each iteration"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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264 <param argument="shuffle" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="@CHECKED@" label="@LABEL@" help="@HELP_TEXT@" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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265 </xml> |
0
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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266 |
15
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267 <xml name="random_state" token_default_value="" token_help_text="Integer number. The seed of the pseudo random number generator to use when shuffling the data. A fixed seed allows reproducible results. default=None."> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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268 <param argument="random_state" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Random seed number" help="@HELP_TEXT@" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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269 </xml> |
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270 |
15
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271 <xml name="warm_start" token_checked="true" token_help_text="When set to True, reuse the solution of the previous call to fit as initialization,otherwise, just erase the previous solution."> |
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272 <param argument="warm_start" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="@CHECKED@" label="Perform warm start" help="@HELP_TEXT@" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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273 </xml> |
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274 |
15
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275 <xml name="C" token_default_value="1.0" token_help_text="Penalty parameter C of the error term."> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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276 <param argument="C" type="float" optional="true" value="@DEFAULT_VALUE@" label="Penalty parameter" help="@HELP_TEXT@" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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277 </xml> |
0
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278 |
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279 <!--xml name="class_weight" token_default_value="" token_help_text=""> |
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280 <param argument="class_weight" type="" optional="true" value="@DEFAULT_VALUE@" label="" help="@HELP_TEXT@" /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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281 </xml--> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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282 |
15
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283 <xml name="alpha" token_default_value="0.0001" token_help_text="Constant that multiplies the regularization term if regularization is used. "> |
2eb5c017958d
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284 <param argument="alpha" type="float" optional="true" value="@DEFAULT_VALUE@" label="Regularization coefficient" help="@HELP_TEXT@" /> |
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285 </xml> |
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286 |
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287 <xml name="n_samples" token_default_value="100" token_help_text="The total number of points equally divided among clusters."> |
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288 <param argument="n_samples" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Number of samples" help="@HELP_TEXT@" /> |
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289 </xml> |
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290 |
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291 <xml name="n_features" token_default_value="2" token_help_text="Number of different numerical properties produced for each sample."> |
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292 <param argument="n_features" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Number of features" help="@HELP_TEXT@" /> |
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293 </xml> |
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294 |
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295 <xml name="noise" token_default_value="0.0" token_help_text="Floating point number. "> |
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296 <param argument="noise" type="float" optional="true" value="@DEFAULT_VALUE@" label="Standard deviation of the Gaussian noise added to the data" help="@HELP_TEXT@" /> |
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297 </xml> |
0
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298 |
15
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299 <xml name="C" token_default_value="1.0" token_help_text="Penalty parameter C of the error term. "> |
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300 <param argument="C" type="float" optional="true" value="@DEFAULT_VALUE@" label="Penalty parameter" help="@HELP_TEXT@" /> |
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301 </xml> |
0
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302 |
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303 <xml name="max_iter" token_default_value="300" token_label="Maximum number of iterations per single run" token_help_text=" "> |
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304 <param argument="max_iter" type="integer" optional="true" value="@DEFAULT_VALUE@" label="@LABEL@" help="@HELP_TEXT@" /> |
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305 </xml> |
0
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306 |
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307 <xml name="n_init" token_default_value="10" > |
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308 <param argument="n_init" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Number of runs with different centroid seeds" help=" " /> |
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309 </xml> |
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310 |
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311 <xml name="init"> |
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312 <param argument="init" type="select" label="Centroid initialization method" help="''k-means++'' selects initial cluster centers that speed up convergence. ''random'' chooses k observations (rows) at random from data as initial centroids."> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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313 <option value="k-means++">k-means++</option> |
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314 <option value="random">random</option> |
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315 </param> |
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316 </xml> |
0
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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317 |
15
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318 <xml name="gamma" token_default_value="1.0" token_label="Scaling parameter" token_help_text=" "> |
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319 <param argument="gamma" type="float" optional="true" value="@DEFAULT_VALUE@" label="@LABEL@" help="@HELP_TEXT@" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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320 </xml> |
0
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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321 |
15
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322 <xml name="degree" token_default_value="3" token_label="Degree of the polynomial" token_help_text=" "> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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323 <param argument="degree" type="integer" optional="true" value="@DEFAULT_VALUE@" label="@LABEL@" help="@HELP_TEXT@" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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324 </xml> |
0
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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325 |
15
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326 <xml name="coef0" token_default_value="1" token_label="Zero coefficient" token_help_text=" "> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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327 <param argument="coef0" type="integer" optional="true" value="@DEFAULT_VALUE@" label="@LABEL@" help="@HELP_TEXT@" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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328 </xml> |
0
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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329 |
15
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330 <xml name="pos_label" token_default_value=""> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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331 <param argument="pos_label" type="integer" optional="true" value="@DEFAULT_VALUE@" label="Label of the positive class" help=" " /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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332 </xml> |
0
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333 |
15
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334 <xml name="average"> |
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335 <param argument="average" type="select" optional="true" label="Averaging type" help=" "> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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336 <option value="micro">Calculate metrics globally by counting the total true positives, false negatives and false positives. (micro)</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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337 <option value="samples">Calculate metrics for each instance, and find their average. Only meaningful for multilabel. (samples)</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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338 <option value="macro">Calculate metrics for each label, and find their unweighted mean. This does not take label imbalance into account. (macro)</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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339 <option value="weighted">Calculate metrics for each label, and find their average, weighted by support (the number of true instances for each label). This alters ‘macro’ to account for label imbalance; it can result in an F-score that is not between precision and recall. (weighted)</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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340 <option value="None">None</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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341 <yield /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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342 </param> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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343 </xml> |
0
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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344 |
15
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345 <xml name="beta"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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346 <param argument="beta" type="float" value="1.0" label="The strength of recall versus precision in the F-score" help=" " /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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347 </xml> |
0
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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348 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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349 |
15
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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350 <!--Data interface--> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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351 |
15
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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352 <xml name="samples_tabular" token_label1="Training samples dataset:" token_multiple1="false" token_multiple2="false"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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353 <param name="infile1" type="data" format="tabular" label="@LABEL1@" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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354 <param name="header1" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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355 <conditional name="column_selector_options_1"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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356 <expand macro="samples_column_selector_options" multiple="@MULTIPLE1@" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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357 </conditional> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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358 <param name="infile2" type="data" format="tabular" label="Dataset containing class labels or target values:" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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359 <param name="header2" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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360 <conditional name="column_selector_options_2"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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361 <expand macro="samples_column_selector_options" column_option="selected_column_selector_option2" col_name="col2" multiple="@MULTIPLE2@" infile="infile2" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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362 </conditional> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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363 <yield /> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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364 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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365 |
15
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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366 <xml name="samples_column_selector_options" token_column_option="selected_column_selector_option" token_col_name="col1" token_multiple="False" token_infile="infile1"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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367 <param name="@COLUMN_OPTION@" type="select" label="Choose how to select data by column:"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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368 <option value="by_index_number" selected="true">Select columns by column index number(s)</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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369 <option value="all_but_by_index_number">All columns EXCLUDING some by column index number(s)</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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370 <option value="by_header_name">Select columns by column header name(s)</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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371 <option value="all_but_by_header_name">All columns EXCLUDING some by column header name(s)</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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372 <option value="all_columns">All columns</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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373 </param> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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374 <when value="by_index_number"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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375 <param name="@COL_NAME@" multiple="@MULTIPLE@" type="data_column" use_header_names="true" data_ref="@INFILE@" label="Select target column(s):" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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376 </when> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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377 <when value="all_but_by_index_number"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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378 <param name="@COL_NAME@" multiple="@MULTIPLE@" type="data_column" use_header_names="true" data_ref="@INFILE@" label="Select target column(s):" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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379 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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380 <when value="by_header_name"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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381 <param name="@COL_NAME@" type="text" value="" label="Type header name(s):" help="Comma-separated string. For example: target1,target2" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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382 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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383 <when value="all_but_by_header_name"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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384 <param name="@COL_NAME@" type="text" value="" label="Type header name(s):" help="Comma-separated string. For example: target1,target2" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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385 </when> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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386 <when value="all_columns"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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387 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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388 </xml> |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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389 |
15
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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390 <xml name="clf_inputs_extended" token_label1=" " token_label2=" " token_multiple="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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391 <conditional name="true_columns"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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changeset
|
392 <param name="selected_input1" type="select" label="Select the input type of true labels dataset:"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
393 <option value="tabular" selected="true">Tabular</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
394 <option value="sparse">Sparse</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
395 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
396 <when value="tabular"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
397 <param name="infile1" type="data" label="@LABEL1@" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
398 <param name="col1" type="data_column" data_ref="infile1" label="Select the target column:" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
399 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
400 <when value="sparse"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
401 <param name="infile1" type="data" format="txt" label="@LABEL1@" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
402 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
403 </conditional> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
404 <conditional name="predicted_columns"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
405 <param name="selected_input2" type="select" label="Select the input type of predicted labels dataset:"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
406 <option value="tabular" selected="true">Tabular</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
407 <option value="sparse">Sparse</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
408 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
409 <when value="tabular"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
410 <param name="infile2" type="data" label="@LABEL2@" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
411 <param name="col2" multiple="@MULTIPLE@" type="data_column" data_ref="infile2" label="Select target column(s):" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
412 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
413 <when value="sparse"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
414 <param name="infile2" type="data" format="txt" label="@LABEL1@" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
415 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
416 </conditional> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
417 </xml> |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
parents:
7
diff
changeset
|
418 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
419 <xml name="clf_inputs" token_label1="Dataset containing true labels (tabular):" token_label2="Dataset containing predicted values (tabular):" token_multiple1="False" token_multiple="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
420 <param name="infile1" type="data" format="tabular" label="@LABEL1@" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
421 <param name="header1" type="boolean" optional="True" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
422 <conditional name="column_selector_options_1"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
423 <expand macro="samples_column_selector_options" multiple="@MULTIPLE1@" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
424 </conditional> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
425 <param name="infile2" type="data" format="tabular" label="@LABEL2@" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
426 <param name="header2" type="boolean" optional="True" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
427 <conditional name="column_selector_options_2"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
428 <expand macro="samples_column_selector_options" column_option="selected_column_selector_option2" col_name="col2" multiple="@MULTIPLE@" infile="infile2" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
429 </conditional> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
430 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
431 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
432 <xml name="multiple_input" token_name="input_files" token_max_num="10" token_format="txt" token_label="Sparse matrix file (.mtx, .txt)" token_help_text="Specify a sparse matrix file in .txt format."> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
433 <repeat name="@NAME@" min="1" max="@MAX_NUM@" title="Select input file(s):"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
434 <param name="input" type="data" format="@FORMAT@" label="@LABEL@" help="@HELP_TEXT@" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
435 </repeat> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
436 </xml> |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
parents:
7
diff
changeset
|
437 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
438 <xml name="sparse_target" token_label1="Select a sparse matrix:" token_label2="Select the tabular containing true labels:" token_multiple="False" token_format1="txt" token_format2="tabular" token_help1="" token_help2=""> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
439 <param name="infile1" type="data" format="@FORMAT1@" label="@LABEL1@" help="@HELP1@" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
440 <expand macro="input_tabular_target" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
441 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
442 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
443 <xml name="sl_mixed_input"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
444 <conditional name="input_options"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
445 <expand macro="data_input_options" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
446 <expand macro="data_input_whens" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
447 </conditional> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
448 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
449 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
450 <xml name="sl_mixed_input_plus_sequence"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
451 <conditional name="input_options"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
452 <expand macro="data_input_options"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
453 <option value="seq_fasta">sequnences in a fasta file</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
454 <option value="refseq_and_interval">reference genome and intervals</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
455 </expand> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
456 <expand macro="data_input_whens"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
457 <when value="seq_fasta"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
458 <expand macro="inputs_seq_fasta" /> |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
parents:
7
diff
changeset
|
459 </when> |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
460 <when value="refseq_and_interval"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
461 <expand macro="inputs_refseq_and_interval" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
462 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
463 </expand> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
464 </conditional> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
465 </xml> |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
parents:
7
diff
changeset
|
466 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
467 <xml name="data_input_options"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
468 <param name="selected_input" type="select" label="Select input type:"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
469 <option value="tabular" selected="true">tabular data</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
470 <option value="sparse">sparse matrix</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
471 <yield /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
472 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
473 </xml> |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
parents:
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changeset
|
474 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
475 <xml name="data_input_whens"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
476 <when value="tabular"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
477 <expand macro="samples_tabular" multiple1="true" multiple2="false" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
478 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
479 <when value="sparse"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
480 <expand macro="sparse_target" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
481 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
482 <yield /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
483 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
484 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
485 <xml name="input_tabular_target"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
486 <param name="infile2" type="data" format="tabular" label="Dataset containing class labels or target values:" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
487 <param name="header2" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="false" label="Does the dataset contain header:" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
488 <conditional name="column_selector_options_2"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
489 <expand macro="samples_column_selector_options" column_option="selected_column_selector_option2" col_name="col2" multiple="false" infile="infile2" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
490 </conditional> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
491 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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changeset
|
492 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
493 <xml name="inputs_seq_fasta"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
494 <param name="fasta_path" type="data" format="fasta" label="Dataset containing fasta genomic/protein sequences" help="Sequences will be one-hot encoded to arrays." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
495 <expand macro="input_tabular_target" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
496 </xml> |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
parents:
7
diff
changeset
|
497 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
498 <xml name="inputs_refseq_and_interval"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
499 <param name="ref_genome_file" type="data" format="fasta" label="Dataset containing reference genomic sequence" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
500 <param name="interval_file" type="data" format="interval" label="Dataset containing sequence intervals for training" help="interval. Sequences will be retrieved from the reference genome and one-hot encoded to training arrays." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
501 <param name="target_file" type="data" format="bed" label="Dataset containing positions and features for target values." help="bed. The file will be compressed with `bgzip` and then indexed using `tabix`." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
502 <param name="infile2" type="data" format="tabular" label="Dataset containing the feature list for prediction" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
503 <param name="header2" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="false" label="Does the dataset contain header:" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
504 <conditional name="column_selector_options_2"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
505 <expand macro="samples_column_selector_options" column_option="selected_column_selector_option2" col_name="col2" multiple="true" infile="infile2" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
506 </conditional> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
507 </xml> |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
parents:
7
diff
changeset
|
508 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
509 <!--Advanced options--> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
510 <xml name="nn_advanced_options"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
511 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
512 <yield /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
513 <param argument="weights" type="select" label="Weight function" help="Used in prediction."> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
514 <option value="uniform" selected="true">Uniform weights. All points in each neighborhood are weighted equally. (Uniform)</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
515 <option value="distance">Weight points by the inverse of their distance. (Distance)</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
516 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
517 <param argument="algorithm" type="select" label="Neighbor selection algorithm" help=" "> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
518 <option value="auto" selected="true">Auto</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
519 <option value="ball_tree">BallTree</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
520 <option value="kd_tree">KDTree</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
521 <option value="brute">Brute-force</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
522 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
523 <param argument="leaf_size" type="integer" value="30" label="Leaf size" help="Used with BallTree and KDTree. Affects the time and memory usage of the constructed tree." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
524 <!--param name="metric"--> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
525 <!--param name="p"--> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
526 <!--param name="metric_params"--> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
527 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
528 </xml> |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
parents:
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diff
changeset
|
529 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
530 <xml name="svc_advanced_options"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
531 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
532 <yield /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
533 <param argument="kernel" type="select" optional="true" label="Kernel type" help="Kernel type to be used in the algorithm. If none is given, ‘rbf’ will be used."> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
534 <option value="rbf" selected="true">rbf</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
535 <option value="linear">linear</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
536 <option value="poly">poly</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
537 <option value="sigmoid">sigmoid</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
538 <option value="precomputed">precomputed</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
539 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
540 <param argument="degree" type="integer" optional="true" value="3" label="Degree of the polynomial (polynomial kernel only)" help="Ignored by other kernels. dafault : 3 " /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
541 <!--TODO: param argument="gamma" float, optional (default=’auto’) --> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
542 <param argument="coef0" type="float" optional="true" value="0.0" label="Zero coefficient (polynomial and sigmoid kernels only)" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
543 help="Independent term in kernel function. dafault: 0.0 " /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
544 <param argument="shrinking" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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changeset
|
545 label="Use the shrinking heuristic" help=" " /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
546 <param argument="probability" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="false" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
547 label="Enable probability estimates. " help="This must be enabled prior to calling fit, and will slow down that method." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
548 <!-- param argument="cache_size"--> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
549 <!--expand macro="class_weight"/--> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
550 <expand macro="tol" default_value="0.001" help_text="Tolerance for stopping criterion. " /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
551 <expand macro="max_iter" default_value="-1" label="Solver maximum number of iterations" help_text="Hard limit on iterations within solver, or -1 for no limit." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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changeset
|
552 <!--param argument="decision_function_shape"--> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
553 <expand macro="random_state" help_text="Integer number. The seed of the pseudo random number generator to use when shuffling the data for probability estimation. A fixed seed allows reproducible results." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
554 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
555 </xml> |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
parents:
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diff
changeset
|
556 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
557 <xml name="spectral_clustering_advanced_options"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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changeset
|
558 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
559 <expand macro="n_clusters" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
560 <param argument="eigen_solver" type="select" value="" label="Eigen solver" help="The eigenvalue decomposition strategy to use."> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
561 <option value="arpack" selected="true">arpack</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
562 <option value="lobpcg">lobpcg</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
563 <option value="amg">amg</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
564 <!--None--> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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parents:
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diff
changeset
|
565 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
566 <expand macro="random_state" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
567 <expand macro="n_init" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
568 <param argument="gamma" type="float" optional="true" value="1.0" label="Kernel scaling factor" help="Scaling factor of RBF, polynomial, exponential chi^2 and sigmoid affinity kernel. Ignored for affinity=''nearest_neighbors''." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
569 <param argument="affinity" type="select" label="Affinity" help="Affinity kernel to use. "> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
570 <option value="rbf" selected="true">RBF</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
571 <option value="precomputed">precomputed</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
572 <option value="nearest_neighbors">Nearset neighbors</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
573 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
574 <param argument="n_neighbors" type="integer" optional="true" value="10" label="Number of neighbors" help="Number of neighbors to use when constructing the affinity matrix using the nearest neighbors method. Ignored for affinity=''rbf''" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
575 <!--param argument="eigen_tol"--> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
576 <param argument="assign_labels" type="select" label="Assign labels" help="The strategy to use to assign labels in the embedding space."> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
577 <option value="kmeans" selected="true">kmeans</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
578 <option value="discretize">discretize</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
579 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
580 <param argument="degree" type="integer" optional="true" value="3" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
581 label="Degree of the polynomial (polynomial kernel only)" help="Ignored by other kernels. dafault : 3 " /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
582 <param argument="coef0" type="integer" optional="true" value="1" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
583 label="Zero coefficient (polynomial and sigmoid kernels only)" help="Ignored by other kernels. dafault : 1 " /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
584 <!--param argument="kernel_params"--> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
585 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
586 </xml> |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
parents:
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diff
changeset
|
587 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
588 <xml name="minibatch_kmeans_advanced_options"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
589 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
590 <expand macro="n_clusters" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
591 <expand macro="init" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
592 <expand macro="n_init" default_value="3" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
593 <expand macro="max_iter" default_value="100" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
594 <expand macro="tol" help_text="Early stopping heuristics based on normalized center change. To disable set to 0.0 ." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
595 <expand macro="random_state" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
596 <param argument="batch_size" type="integer" optional="true" value="100" label="Batch size" help="Size of the mini batches." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
597 <!--param argument="compute_labels"--> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
598 <param argument="max_no_improvement" type="integer" optional="true" value="10" label="Maximum number of improvement attempts" help=" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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parents:
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diff
changeset
|
599 Convergence detection based on inertia (the consecutive number of mini batches that doe not yield an improvement on the smoothed inertia). |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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changeset
|
600 To disable, set max_no_improvement to None. " /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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changeset
|
601 <param argument="init_size" type="integer" optional="true" value="" label="Number of random initialization samples" help="Number of samples to randomly sample for speeding up the initialization . ( default: 3 * batch_size )" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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changeset
|
602 <param argument="reassignment_ratio" type="float" optional="true" value="0.01" label="Re-assignment ratio" help="Controls the fraction of the maximum number of counts for a center to be reassigned. Higher values yield better clustering results." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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changeset
|
603 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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changeset
|
604 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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changeset
|
605 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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changeset
|
606 <xml name="kmeans_advanced_options"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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changeset
|
607 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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changeset
|
608 <expand macro="n_clusters" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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changeset
|
609 <expand macro="init" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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changeset
|
610 <expand macro="n_init" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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changeset
|
611 <expand macro="max_iter" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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changeset
|
612 <expand macro="tol" default_value="0.0001" help_text="Relative tolerance with regards to inertia to declare convergence." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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changeset
|
613 <!--param argument="precompute_distances"/--> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
614 <expand macro="random_state" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
615 <param argument="copy_x" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" label="Use a copy of data for precomputing distances" help="Mofifying the original data introduces small numerical differences caused by subtracting and then adding the data mean." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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changeset
|
616 <expand macro="kmeans_algorithm" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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changeset
|
617 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
618 </xml> |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
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diff
changeset
|
619 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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parents:
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changeset
|
620 <xml name="kmeans_algorithm"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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changeset
|
621 <param argument="algorithm" type="select" label="K-means algorithm to use:"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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changeset
|
622 <option value="auto" selected="true">auto</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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changeset
|
623 <option value="full">full</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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changeset
|
624 <option value="elkan">elkan</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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changeset
|
625 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
626 </xml> |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
parents:
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changeset
|
627 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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changeset
|
628 <xml name="birch_advanced_options"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
629 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
630 <param argument="threshold" type="float" optional="true" value="0.5" label="Subcluster radius threshold" help="The radius of the subcluster obtained by merging a new sample; the closest subcluster should be less than the threshold to avoid a new subcluster." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
631 <param argument="branching_factor" type="integer" optional="true" value="50" label="Maximum number of subclusters per branch" help="Maximum number of CF subclusters in each node." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
632 <expand macro="n_clusters" default_value="3" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
633 <!--param argument="compute_labels"/--> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
634 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
635 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
636 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
637 <xml name="dbscan_advanced_options"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
638 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
639 <param argument="eps" type="float" optional="true" value="0.5" label="Maximum neighborhood distance" help="The maximum distance between two samples for them to be considered as in the same neighborhood." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
640 <param argument="min_samples" type="integer" optional="true" value="5" label="Minimal core point density" help="The number of samples (or total weight) in a neighborhood for a point (including the point itself) to be considered as a core point." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
641 <param argument="metric" type="text" optional="true" value="euclidean" label="Metric" help="The metric to use when calculating distance between instances in a feature array." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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changeset
|
642 <param argument="algorithm" type="select" label="Pointwise distance computation algorithm" help="The algorithm to be used by the NearestNeighbors module to compute pointwise distances and find nearest neighbors."> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
643 <option value="auto" selected="true">auto</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
644 <option value="ball_tree">ball_tree</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
645 <option value="kd_tree">kd_tree</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
646 <option value="brute">brute</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
647 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
648 <param argument="leaf_size" type="integer" optional="true" value="30" label="Leaf size" help="Leaf size passed to BallTree or cKDTree. Memory and time efficieny factor in tree constrution and querying." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
649 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
650 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
651 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
652 <xml name="clustering_algorithms_options"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
653 <conditional name="algorithm_options"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
654 <param name="selected_algorithm" type="select" label="Clustering Algorithm"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
655 <option value="KMeans" selected="true">KMeans</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
656 <option value="SpectralClustering">Spectral Clustering</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
657 <option value="MiniBatchKMeans">Mini Batch KMeans</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
658 <option value="DBSCAN">DBSCAN</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
659 <option value="Birch">Birch</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
660 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
661 <when value="KMeans"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
662 <expand macro="kmeans_advanced_options" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
663 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
664 <when value="DBSCAN"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
665 <expand macro="dbscan_advanced_options" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
666 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
667 <when value="Birch"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
668 <expand macro="birch_advanced_options" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
669 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
670 <when value="SpectralClustering"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
671 <expand macro="spectral_clustering_advanced_options" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
672 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
673 <when value="MiniBatchKMeans"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
674 <expand macro="minibatch_kmeans_advanced_options" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
675 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
676 </conditional> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
677 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
678 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
679 <xml name="distance_metrics"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
680 <param argument="metric" type="select" label="Distance metric" help=" "> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
681 <option value="euclidean" selected="true">euclidean</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
682 <option value="cityblock">cityblock</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
683 <option value="cosine">cosine</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
684 <option value="l1">l1</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
685 <option value="l2">l2</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
686 <option value="manhattan">manhattan</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
687 <yield /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
688 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
689 </xml> |
2
e23cfe4be9d4
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 02087ce2966cf8b4aac9197a41171e7f986c11d1-dirty"
bgruening
parents:
1
diff
changeset
|
690 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
691 <xml name="distance_nonsparse_metrics"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
692 <option value="braycurtis">braycurtis</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
693 <option value="canberra">canberra</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
694 <option value="chebyshev">chebyshev</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
695 <option value="correlation">correlation</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
696 <option value="dice">dice</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
697 <option value="hamming">hamming</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
698 <option value="jaccard">jaccard</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
699 <option value="kulsinski">kulsinski</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
700 <option value="mahalanobis">mahalanobis</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
701 <option value="matching">matching</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
702 <option value="minkowski">minkowski</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
703 <option value="rogerstanimoto">rogerstanimoto</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
704 <option value="russellrao">russellrao</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
705 <option value="seuclidean">seuclidean</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
706 <option value="sokalmichener">sokalmichener</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
707 <option value="sokalsneath">sokalsneath</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
708 <option value="sqeuclidean">sqeuclidean</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
709 <option value="yule">yule</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
710 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
711 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
712 <xml name="pairwise_kernel_metrics"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
713 <param argument="metric" type="select" label="Pirwise Kernel metric" help=" "> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
714 <option value="rbf" selected="true">rbf</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
715 <option value="sigmoid">sigmoid</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
716 <option value="polynomial">polynomial</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
717 <option value="linear" selected="true">linear</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
718 <option value="chi2">chi2</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
719 <option value="additive_chi2">additive_chi2</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
720 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
721 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
722 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
723 <xml name="sparse_pairwise_metric_functions"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
724 <param name="selected_metric_function" type="select" label="Select the pairwise metric you want to compute:"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
725 <option value="euclidean_distances" selected="true">Euclidean distance matrix</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
726 <option value="pairwise_distances">Distance matrix</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
727 <option value="pairwise_distances_argmin">Minimum distances between one point and a set of points</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
728 <yield /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
729 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
730 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
731 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
732 <xml name="pairwise_metric_functions"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
733 <option value="additive_chi2_kernel" >Additive chi-squared kernel</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
734 <option value="chi2_kernel">Exponential chi-squared kernel</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
735 <option value="linear_kernel">Linear kernel</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
736 <option value="manhattan_distances">L1 distances</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
737 <option value="pairwise_kernels">Kernel</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
738 <option value="polynomial_kernel">Polynomial kernel</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
739 <option value="rbf_kernel">Gaussian (rbf) kernel</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
740 <option value="laplacian_kernel">Laplacian kernel</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
741 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
742 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
743 <xml name="sparse_pairwise_condition"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
744 <when value="pairwise_distances"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
745 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
746 <expand macro="distance_metrics"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
747 <yield /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
748 </expand> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
749 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
750 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
751 <when value="euclidean_distances"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
752 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
753 <param argument="squared" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="false" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
754 label="Return squared Euclidean distances" help=" " /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
755 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
756 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
757 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
758 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
759 <xml name="argmin_distance_condition"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
760 <when value="pairwise_distances_argmin"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
761 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
762 <param argument="axis" type="integer" optional="true" value="1" label="Axis" help="Axis along which the argmin and distances are to be computed." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
763 <expand macro="distance_metrics"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
764 <yield /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
765 </expand> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
766 <param argument="batch_size" type="integer" optional="true" value="500" label="Batch size" help="Number of rows to be processed in each batch run." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
767 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
768 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
769 </xml> |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
parents:
7
diff
changeset
|
770 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
771 <xml name="sparse_preprocessors"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
772 <param name="selected_pre_processor" type="select" label="Select a preprocessor:"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
773 <option value="StandardScaler" selected="true">Standard Scaler (Standardizes features by removing the mean and scaling to unit variance)</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
774 <option value="Binarizer">Binarizer (Binarizes data)</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
775 <option value="MaxAbsScaler">Max Abs Scaler (Scales features by their maximum absolute value)</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
776 <option value="Normalizer">Normalizer (Normalizes samples individually to unit norm)</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
777 <yield /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
778 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
779 </xml> |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
parents:
7
diff
changeset
|
780 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
781 <xml name="sparse_preprocessors_ext"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
782 <expand macro="sparse_preprocessors"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
783 <option value="KernelCenterer">Kernel Centerer (Centers a kernel matrix)</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
784 <option value="MinMaxScaler">Minmax Scaler (Scales features to a range)</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
785 <option value="PolynomialFeatures">Polynomial Features (Generates polynomial and interaction features)</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
786 <option value="RobustScaler">Robust Scaler (Scales features using outlier-invariance statistics)</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
787 <option value="QuantileTransformer">QuantileTransformer (Transform features using quantiles information)</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
788 <option value="PowerTransformer">PowerTransformer (Apply a power transform featurewise to make data more Gaussian-like)</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
789 <option value="KBinsDiscretizer">KBinsDiscretizer (Bin continuous data into intervals.)</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
790 </expand> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
791 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
792 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
793 <xml name="sparse_preprocessor_options"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
794 <when value="Binarizer"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
795 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
796 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
797 label="Use a copy of data for precomputing binarization" help=" " /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
798 <param argument="threshold" type="float" optional="true" value="0.0" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
799 label="Threshold" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
800 help="Feature values below or equal to this are replaced by 0, above it by 1. Threshold may not be less than 0 for operations on sparse matrices. " /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
801 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
802 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
803 <when value="StandardScaler"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
804 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
805 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
806 label="Use a copy of data for performing inplace scaling" help=" " /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
807 <param argument="with_mean" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
808 label="Center the data before scaling" help=" " /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
809 <param argument="with_std" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
810 label="Scale the data to unit variance (or unit standard deviation)" help=" " /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
811 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
812 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
813 <when value="MaxAbsScaler"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
814 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
815 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
816 label="Use a copy of data for precomputing scaling" help=" " /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
817 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
818 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
819 <when value="Normalizer"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
820 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
821 <param argument="norm" type="select" optional="true" label="The norm to use to normalize non zero samples" help=" "> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
822 <option value="l1" selected="true">l1</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
823 <option value="l2">l2</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
824 <option value="max">max</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
825 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
826 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="true" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
827 label="Use a copy of data for precomputing row normalization" help=" " /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
828 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
829 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
830 <yield /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
831 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
832 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
833 <xml name="sparse_preprocessor_options_ext"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
834 <expand macro="sparse_preprocessor_options"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
835 <when value="KernelCenterer"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
836 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
837 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
838 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
839 <when value="MinMaxScaler"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
840 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
841 <param argument="feature_range" type="text" value="(0, 1)" optional="true" help="Desired range of transformed data. None or tuple (min, max). None equals to (0, 1)" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
842 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
843 label="Use a copy of data for precomputing normalization" help=" " /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
844 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
845 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
846 <when value="PolynomialFeatures"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
847 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
848 <param argument="degree" type="integer" optional="true" value="2" label="The degree of the polynomial features " help="" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
849 <param argument="interaction_only" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="false" label="Produce interaction features only" help="(Features that are products of at most degree distinct input features) " /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
850 <param argument="include_bias" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true" label="Include a bias column" help="Feature in which all polynomial powers are zero " /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
851 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
852 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
853 <when value="RobustScaler"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
854 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
855 <!--=True, =True, copy=True--> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
856 <param argument="with_centering" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
857 label="Center the data before scaling" help=" " /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
858 <param argument="with_scaling" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
859 label="Scale the data to interquartile range" help=" " /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
860 <param argument="copy" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolflase" checked="true" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
861 label="Use a copy of data for inplace scaling" help=" " /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
862 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
863 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
864 <when value="QuantileTransformer"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
865 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
866 <param name="n_quantiles" type="integer" value="1000" min="0" label="Number of quantiles to be computed" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
867 <param name="output_distribution" type="select" label="Marginal distribution for the transformed data"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
868 <option value="uniform" selected="true">uniform</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
869 <option value="normal">normal</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
870 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
871 <param name="ignore_implicit_zeros" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="false" label="Whether to discard sparse entries" help="Only applies to sparse matrices. If False, sparse entries are treated as zeros" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
872 <param name="subsample" type="integer" value="100000" label="Maximum number of samples used to estimate the quantiles for computational efficiency" help="Note that the subsampling procedure may differ for value-identical sparse and dense matrices." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
873 <expand macro="random_state" help_text="This is used by subsampling and smoothing noise" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
874 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
875 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
876 <when value="PowerTransformer"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
877 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
878 <param name="method" type="select" label="The power transform method"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
879 <option value="yeo-johnson" selected="true">yeo-johnson (works with positive and negative values)</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
880 <option value="box-cox">box-cox (might perform better, but only works with strictly positive values)</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
881 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
882 <param name="standardize" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="true" label="Whether to apply zero-mean, unit-variance normalization to the transformed output." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
883 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
884 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
885 <when value="KBinsDiscretizer"> |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
parents:
7
diff
changeset
|
886 <section name="options" title="Advanced Options" expanded="False"> |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
887 <param name="n_bins" type="integer" value="5" min="2" label="The number of bins to produce" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
888 <param name="encode" type="select" label="Method used to encode the transformed result"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
889 <option value="onehot" selected="true">onehot (encode the transformed result with one-hot encoding and return a sparse matrix)</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
890 <option value="onehot-dense">onehot-dense (encode the transformed result with one-hot encoding and return a dense array)</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
891 <option value="ordinal">ordinal (return the bin identifier encoded as an integer value)</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
892 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
893 <param name="strategy" type="select" label="Strategy used to define the widths of the bins"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
894 <option value="uniform">uniform (all bins in each feature have identical widths)</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
895 <option value="quantile" selected="true">quantile (all bins in each feature have the same number of points)</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
896 <option value="kmeans">kmeans (values in each bin have the same nearest center of a 1D k-means cluster)</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
897 </param> |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
parents:
7
diff
changeset
|
898 </section> |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
899 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
900 </expand> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
901 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
902 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
903 <xml name="cv_splitter"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
904 <option value="default" selected="true">default splitter</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
905 <option value="KFold">KFold</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
906 <option value="StratifiedKFold">StratifiedKFold</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
907 <option value="LeaveOneOut">LeaveOneOut</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
908 <option value="LeavePOut">LeavePOut</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
909 <option value="RepeatedKFold">RepeatedKFold</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
910 <option value="RepeatedStratifiedKFold">RepeatedStratifiedKFold</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
911 <option value="ShuffleSplit">ShuffleSplit</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
912 <option value="StratifiedShuffleSplit">StratifiedShuffleSplit</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
913 <option value="TimeSeriesSplit">TimeSeriesSplit</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
914 <option value="PredefinedSplit">PredefinedSplit</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
915 <option value="OrderedKFold">OrderedKFold</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
916 <option value="RepeatedOrderedKFold">RepeatedOrderedKFold</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
917 <yield /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
918 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
919 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
920 <xml name="cv_splitter_options"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
921 <when value="default"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
922 <expand macro="cv_n_splits" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
923 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
924 <when value="KFold"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
925 <expand macro="cv_n_splits" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
926 <expand macro="cv_shuffle" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
927 <expand macro="random_state" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
928 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
929 <when value="StratifiedKFold"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
930 <expand macro="cv_n_splits" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
931 <expand macro="cv_shuffle" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
932 <expand macro="random_state" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
933 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
934 <when value="LeaveOneOut"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
935 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
936 <when value="LeavePOut"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
937 <param argument="p" type="integer" value="" label="p" help="Integer. Size of the test sets." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
938 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
939 <when value="RepeatedKFold"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
940 <expand macro="cv_n_splits" value="5" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
941 <param argument="n_repeats" type="integer" value="10" label="n_repeats" help="Number of times cross-validator needs to be repeated." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
942 <expand macro="random_state" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
943 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
944 <when value="RepeatedStratifiedKFold"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
945 <expand macro="cv_n_splits" value="5" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
946 <param argument="n_repeats" type="integer" value="10" label="n_repeats" help="Number of times cross-validator needs to be repeated." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
947 <expand macro="random_state" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
948 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
949 <when value="ShuffleSplit"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
950 <expand macro="cv_n_splits" value="10" help="Number of re-shuffling and splitting iterations." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
951 <expand macro="cv_test_size" value="0.1" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
952 <expand macro="random_state" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
953 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
954 <when value="StratifiedShuffleSplit"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
955 <expand macro="cv_n_splits" value="10" help="Number of re-shuffling and splitting iterations." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
956 <expand macro="cv_test_size" value="0.1" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
957 <expand macro="random_state" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
958 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
959 <when value="TimeSeriesSplit"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
960 <expand macro="cv_n_splits" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
961 <param argument="max_train_size" type="integer" value="" optional="true" label="Maximum size of the training set" help="Maximum size for a single training set." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
962 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
963 <when value="PredefinedSplit"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
964 <param argument="test_fold" type="text" value="" area="true" label="test_fold" help="List, e.g., [0, 1, -1, 1], represents two test sets, [X[0]] and [X[1], X[3]], X[2] is excluded from any test set due to '-1'." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
965 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
966 <when value="OrderedKFold"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
967 <expand macro="cv_n_splits" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
968 <expand macro="cv_shuffle" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
969 <expand macro="random_state" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
970 <expand macro="cv_n_stratification_bins" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
971 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
972 <when value="RepeatedOrderedKFold"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
973 <expand macro="cv_n_splits" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
974 <param argument="n_repeats" type="integer" value="5" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
975 <expand macro="random_state" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
976 <expand macro="cv_n_stratification_bins" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
977 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
978 <yield /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
979 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
980 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
981 <xml name="cv"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
982 <conditional name="cv_selector"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
983 <param name="selected_cv" type="select" label="Select the cv splitter:"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
984 <expand macro="cv_splitter"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
985 <option value="GroupKFold">GroupKFold</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
986 <option value="GroupShuffleSplit">GroupShuffleSplit</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
987 <option value="LeaveOneGroupOut">LeaveOneGroupOut</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
988 <option value="LeavePGroupsOut">LeavePGroupsOut</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
989 </expand> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
990 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
991 <expand macro="cv_splitter_options"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
992 <when value="GroupKFold"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
993 <expand macro="cv_n_splits" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
994 <expand macro="cv_groups" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
995 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
996 <when value="GroupShuffleSplit"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
997 <expand macro="cv_n_splits" value="5" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
998 <expand macro="cv_test_size" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
999 <expand macro="random_state" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1000 <expand macro="cv_groups" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1001 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1002 <when value="LeaveOneGroupOut"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1003 <expand macro="cv_groups" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1004 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1005 <when value="LeavePGroupsOut"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1006 <param argument="n_groups" type="integer" value="" label="n_groups" help="Number of groups (p) to leave out in the test split." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1007 <expand macro="cv_groups" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1008 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1009 </expand> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1010 </conditional> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1011 </xml> |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
parents:
7
diff
changeset
|
1012 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1013 <xml name="cv_reduced" token_label="Select the cv splitter"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1014 <conditional name="cv_selector"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1015 <param name="selected_cv" type="select" label="@LABEL@"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1016 <expand macro="cv_splitter" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1017 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1018 <expand macro="cv_splitter_options" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1019 </conditional> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1020 </xml> |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
parents:
7
diff
changeset
|
1021 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1022 <xml name="cv_n_splits" token_value="5" token_help="Number of folds. Must be at least 2."> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1023 <!--why set min to 1?--> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1024 <param argument="n_splits" type="integer" value="@VALUE@" min="1" label="n_splits" help="@HELP@" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1025 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
1026 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1027 <xml name="cv_shuffle"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1028 <param argument="shuffle" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="false" label="Whether to shuffle data before splitting" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1029 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
1030 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1031 <xml name="cv_n_stratification_bins"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1032 <param argument="n_stratification_bins" type="integer" value="" optional="true" help="Integer. The number of stratification bins. Only relevent when shuffle is True. Valid in [2, `n_samples // n_splits`]. Default value is None, which is same as `n_samples // n_splits`. The higher the value is, the distribution of target values is more approximately the ame across all split folds." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1033 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1034 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1035 <xml name="cv_test_size" token_value="0.2"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1036 <param argument="test_size" type="float" value="@VALUE@" min="0.0" label="Portion or number of the test set" help="0.0-1.0, proportion of the dataset to include in the test split; >1, integer only, the absolute number of test samples " /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1037 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1038 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1039 <xml name="cv_groups" > |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1040 <section name="groups_selector" title="Groups column selector" expanded="true"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1041 <param name="infile_g" type="data" format="tabular" label="Choose dataset containing groups info:" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1042 <param name="header_g" type="boolean" optional="true" truevalue="booltrue" falsevalue="boolfalse" checked="False" label="Does the dataset contain header:" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1043 <conditional name="column_selector_options_g"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1044 <expand macro="samples_column_selector_options" column_option="selected_column_selector_option_g" col_name="col_g" multiple="False" infile="infile_g" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1045 </conditional> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1046 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1047 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1048 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1049 <xml name="train_test_split_params"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1050 <conditional name="split_algos"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1051 <param name="shuffle" type="select" label="Select the splitting method"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1052 <option value="None">No shuffle</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1053 <option value="simple" selected="true">ShuffleSplit</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1054 <option value="stratified">StratifiedShuffleSplit -- target values serve as class labels</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1055 <option value="group">GroupShuffleSplit or split by group names</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1056 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1057 <when value="None"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1058 <expand macro="train_test_split_test_size" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1059 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1060 <when value="simple"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1061 <expand macro="train_test_split_test_size" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1062 <expand macro="random_state" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1063 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1064 <when value="stratified"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1065 <expand macro="train_test_split_test_size" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1066 <expand macro="random_state" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1067 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1068 <when value="group"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1069 <expand macro="train_test_split_test_size" optional="true" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1070 <expand macro="random_state" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1071 <param argument="group_names" type="text" value="" optional="true" label="Type in group names instead" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1072 help="For example: chr6, chr7. This parameter is optional. If used, it will override the holdout size and random seed." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1073 <yield /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1074 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1075 </conditional> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1076 <!--param argument="train_size" type="float" optional="True" value="" label="Train size:" />--> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1077 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1078 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1079 <xml name="train_test_split_test_size" token_optional="false"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1080 <param name="test_size" type="float" value="0.2" optional="@OPTIONAL@" label="Holdout size" help="Leass than 1, for preportion; greater than 1 (integer), for number of samples." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1081 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1082 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1083 <xml name="feature_selection_algorithms"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
1084 <option value="SelectKBest" selected="true">SelectKBest - Select features according to the k highest scores</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
1085 <option value="GenericUnivariateSelect">GenericUnivariateSelect - Univariate feature selector with configurable strategy</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
1086 <option value="SelectPercentile">SelectPercentile - Select features according to a percentile of the highest scores</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
1087 <option value="SelectFpr">SelectFpr - Filter: Select the p-values below alpha based on a FPR test</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
1088 <option value="SelectFdr">SelectFdr - Filter: Select the p-values for an estimated false discovery rate</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
1089 <option value="SelectFwe">SelectFwe - Filter: Select the p-values corresponding to Family-wise error rate</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
1090 <option value="VarianceThreshold">VarianceThreshold - Feature selector that removes all low-variance features</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
1091 <option value="SelectFromModel">SelectFromModel - Meta-transformer for selecting features based on importance weights</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
1092 <option value="RFE">RFE - Feature ranking with recursive feature elimination</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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parents:
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diff
changeset
|
1093 <option value="RFECV">RFECV - Feature ranking with recursive feature elimination and cross-validated selection of the best number of features</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
1094 <yield /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
1095 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
1096 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
1097 <xml name="feature_selection_algorithm_details"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
1098 <when value="GenericUnivariateSelect"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
1099 <expand macro="feature_selection_score_function" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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parents:
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diff
changeset
|
1100 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
1101 <param argument="mode" type="select" label="Feature selection mode"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
1102 <option value="percentile">percentile</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
1103 <option value="k_best">k_best</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
1104 <option value="fpr">fpr</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
1105 <option value="fdr">fdr</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
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diff
changeset
|
1106 <option value="fwe">fwe</option> |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
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diff
changeset
|
1107 </param> |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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parents:
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diff
changeset
|
1108 <param argument="param" type="float" value="" optional="true" label="Parameter of the corresponding mode" help="float or int depending on the feature selection mode" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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parents:
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diff
changeset
|
1109 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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parents:
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diff
changeset
|
1110 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
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14
diff
changeset
|
1111 <when value="SelectPercentile"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1112 <expand macro="feature_selection_score_function" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1113 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1114 <param argument="percentile" type="integer" value="10" optional="True" label="Percent of features to keep" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1115 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1116 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1117 <when value="SelectKBest"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1118 <expand macro="feature_selection_score_function" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1119 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1120 <param argument="k" type="integer" value="10" optional="True" label="Number of top features to select" help="No 'all' option is supported." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1121 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1122 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1123 <when value="SelectFpr"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1124 <expand macro="feature_selection_score_function" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1125 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1126 <param argument="alpha" type="float" value="" optional="True" label="Alpha" help="The highest p-value for features to be kept." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1127 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1128 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1129 <when value="SelectFdr"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1130 <expand macro="feature_selection_score_function" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1131 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1132 <param argument="alpha" type="float" value="" optional="True" label="Alpha" help="The highest uncorrected p-value for features to keep." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1133 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1134 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1135 <when value="SelectFwe"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1136 <expand macro="feature_selection_score_function" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1137 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1138 <param argument="alpha" type="float" value="" optional="True" label="Alpha" help="The highest uncorrected p-value for features to keep." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1139 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1140 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1141 <when value="VarianceThreshold"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1142 <section name="options" title="Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1143 <param argument="threshold" type="float" value="0.0" optional="True" label="Threshold" help="Features with a training-set variance lower than this threshold will be removed." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1144 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1145 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1146 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
1147 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1148 <xml name="feature_selection_SelectFromModel"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1149 <when value="SelectFromModel"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1150 <conditional name="model_inputter"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1151 <param name="input_mode" type="select" label="Construct a new estimator from a selection list?" > |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1152 <option value="new" selected="true">Yes</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1153 <option value="prefitted">No. Load a prefitted estimator</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1154 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1155 <when value="new"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1156 <expand macro="estimator_selector_fs" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1157 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1158 <when value="prefitted"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1159 <param name="fitted_estimator" type="data" format='h5mlm' label="Load a prefitted estimator" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1160 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1161 </conditional> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1162 <expand macro="feature_selection_SelectFromModel_options" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1163 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1164 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
1165 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1166 <xml name="feature_selection_SelectFromModel_no_prefitted"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1167 <when value="SelectFromModel"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1168 <conditional name="model_inputter"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1169 <param name="input_mode" type="select" label="Construct a new estimator from a selection list?" > |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1170 <option value="new" selected="true">Yes</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1171 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1172 <when value="new"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1173 <expand macro="estimator_selector_all" /> |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
parents:
7
diff
changeset
|
1174 </when> |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1175 </conditional> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1176 <expand macro="feature_selection_SelectFromModel_options" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1177 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1178 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1179 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1180 <xml name="feature_selection_SelectFromModel_options"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1181 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1182 <param argument="threshold" type="text" value="" optional="true" label="threshold" help="The threshold value to use for feature selection. e.g. 'mean', 'median', '1.25*mean'." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1183 <param argument="norm_order" type="integer" value="1" label="norm_order" help="Order of the norm used to filter the vectors of coefficients below threshold in the case where the coef_ attribute of the estimator is of dimension 2. " /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1184 <param argument="max_features" type="integer" value="" optional="true" label="The maximum number of features selected scoring above threshold" help="To disable threshold and only select based on max_features, set threshold=-np.inf." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1185 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1186 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1187 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1188 <xml name="feature_selection_RFE"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1189 <when value="RFE"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1190 <yield /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1191 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1192 <param argument="n_features_to_select" type="integer" value="" optional="true" label="n_features_to_select" help="The number of features to select. If None, half of the features are selected." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1193 <param argument="step" type="float" value="1" label="step" optional="true" help="Default = 1. " /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1194 <param argument="verbose" type="integer" value="0" label="verbose" help="Controls verbosity of output." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1195 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1196 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1197 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1198 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1199 <xml name="feature_selection_RFECV_fs"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1200 <when value="RFECV"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1201 <yield /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1202 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1203 <param argument="step" type="float" value="1" label="step" optional="true" help="Default = 1. " /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1204 <param argument="min_features_to_select" type="integer" value="1" optional="true" label="The minimum number of features to be selected" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1205 <expand macro="cv" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1206 <expand macro="scoring_selection" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1207 <param argument="verbose" type="integer" value="0" label="verbose" help="Controls verbosity of output." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1208 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1209 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1210 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1211 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1212 <xml name="feature_selection_RFECV_pipeline"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1213 <when value="RFECV"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1214 <yield /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1215 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1216 <param argument="step" type="float" value="1" label="step" optional="true" help="Default = 1. " /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1217 <param argument="min_features_to_select" type="integer" value="1" optional="true" label="The minimum number of features to be selected" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1218 <expand macro="cv_reduced" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1219 <!-- TODO: group splitter support--> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1220 <expand macro="scoring_selection" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1221 <param argument="verbose" type="integer" value="0" label="verbose" help="Controls verbosity of output." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1222 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1223 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1224 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1225 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1226 <xml name="feature_selection_DyRFECV_fs"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1227 <when value="DyRFECV"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1228 <yield /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1229 <section name="options" title="Advanced Options" expanded="False"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1230 <param argument="step" type="text" size="30" value="1" label="step" optional="true" help="Default = 1. Support float, int and list." > |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1231 <sanitizer> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1232 <valid initial="default"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1233 <add value="[" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1234 <add value="]" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1235 </valid> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1236 </sanitizer> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1237 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1238 <param argument="min_features_to_select" type="integer" value="1" optional="true" label="The minimum number of features to be selected" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1239 <expand macro="cv" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1240 <expand macro="scoring_selection" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1241 <param argument="verbose" type="integer" value="0" label="verbose" help="Controls verbosity of output." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1242 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1243 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1244 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1245 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1246 <xml name="feature_selection_pipeline"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1247 <!--compare to `feature_selection_fs`, no fitted estimator for SelectFromModel and no custom estimator for RFE and RFECV--> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1248 <conditional name="fs_algorithm_selector"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1249 <param name="selected_algorithm" type="select" label="Select a feature selection algorithm"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1250 <expand macro="feature_selection_algorithms" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1251 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1252 <expand macro="feature_selection_algorithm_details" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1253 <expand macro="feature_selection_SelectFromModel_no_prefitted" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1254 <expand macro="feature_selection_RFE"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1255 <expand macro="estimator_selector_all" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1256 </expand> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1257 <expand macro="feature_selection_RFECV_pipeline"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1258 <expand macro="estimator_selector_all" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1259 </expand> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1260 <!-- TODO: add DyRFECV to pipeline--> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1261 </conditional> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1262 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1263 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1264 <xml name="feature_selection_fs"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1265 <conditional name="fs_algorithm_selector"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1266 <param name="selected_algorithm" type="select" label="Select a feature selection algorithm"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1267 <expand macro="feature_selection_algorithms"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1268 <option value="DyRFECV">DyRFECV - Extended RFECV with changeable steps</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1269 </expand> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1270 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1271 <expand macro="feature_selection_algorithm_details" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1272 <expand macro="feature_selection_SelectFromModel" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1273 <expand macro="feature_selection_RFE"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1274 <expand macro="estimator_selector_fs" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1275 </expand> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1276 <expand macro="feature_selection_RFECV_fs"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1277 <expand macro="estimator_selector_fs" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1278 </expand> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1279 <expand macro="feature_selection_DyRFECV_fs"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1280 <expand macro="estimator_selector_fs" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1281 </expand> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1282 </conditional> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1283 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1284 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1285 <xml name="feature_selection_score_function"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1286 <param argument="score_func" type="select" label="Select a score function"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1287 <option value="chi2">chi2 - Compute chi-squared stats between each non-negative feature and class</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1288 <option value="f_classif">f_classif - Compute the ANOVA F-value for the provided sample</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1289 <option value="f_regression">f_regression - Univariate linear regression tests</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1290 <option value="mutual_info_classif">mutual_info_classif - Estimate mutual information for a discrete target variable</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1291 <option value="mutual_info_regression">mutual_info_regression - Estimate mutual information for a continuous target variable</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1292 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1293 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1294 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1295 <xml name="model_validation_common_options"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1296 <expand macro="cv" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1297 <expand macro="verbose" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1298 <yield /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1299 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
1300 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1301 <xml name="scoring_selection" token_help="Metric to refit the best estimator."> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1302 <conditional name="scoring"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1303 <param name="primary_scoring" type="select" multiple="false" label="Select the primary metric (scoring):" help="@HELP@"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1304 <option value="default" selected="true">default with estimator</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1305 <expand macro="scoring_selection_options" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1306 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1307 <when value="default" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1308 <when value="accuracy"><expand macro="secondary_scoring_selection_classification" /></when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1309 <when value="balanced_accuracy"><expand macro="secondary_scoring_selection_classification" /></when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1310 <when value="average_precision"><expand macro="secondary_scoring_selection_classification" /></when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1311 <when value="f1"><expand macro="secondary_scoring_selection_classification" /></when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1312 <when value="f1_micro"><expand macro="secondary_scoring_selection_classification" /></when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1313 <when value="f1_macro"><expand macro="secondary_scoring_selection_classification" /></when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1314 <when value="f1_weighted"><expand macro="secondary_scoring_selection_classification" /></when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1315 <when value="f1_samples"><expand macro="secondary_scoring_selection_classification" /></when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1316 <when value="neg_log_loss"><expand macro="secondary_scoring_selection_classification" /></when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1317 <when value="precision"><expand macro="secondary_scoring_selection_classification" /></when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1318 <when value="precision_micro"><expand macro="secondary_scoring_selection_classification" /></when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1319 <when value="precision_macro"><expand macro="secondary_scoring_selection_classification" /></when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1320 <when value="precision_wighted"><expand macro="secondary_scoring_selection_classification" /></when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1321 <when value="precision_samples"><expand macro="secondary_scoring_selection_classification" /></when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1322 <when value="recall"><expand macro="secondary_scoring_selection_classification" /></when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1323 <when value="recall_micro"><expand macro="secondary_scoring_selection_classification" /></when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1324 <when value="recall_macro"><expand macro="secondary_scoring_selection_classification" /></when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1325 <when value="recall_wighted"><expand macro="secondary_scoring_selection_classification" /></when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1326 <when value="recall_samples"><expand macro="secondary_scoring_selection_classification" /></when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1327 <when value="roc_auc"><expand macro="secondary_scoring_selection_classification" /></when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1328 <when value="explained_variance"><expand macro="secondary_scoring_selection_regression" /></when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1329 <when value="neg_mean_absolute_error"><expand macro="secondary_scoring_selection_regression" /></when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1330 <when value="neg_mean_squared_error"><expand macro="secondary_scoring_selection_regression" /></when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1331 <when value="neg_mean_squared_log_error"><expand macro="secondary_scoring_selection_regression" /></when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1332 <when value="neg_median_absolute_error"><expand macro="secondary_scoring_selection_regression" /></when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1333 <when value="r2"><expand macro="secondary_scoring_selection_regression" /></when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1334 <when value="max_error"><expand macro="secondary_scoring_selection_regression" /></when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1335 <when value="spearman_correlation"><expand macro="secondary_scoring_selection_regression" /></when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1336 <when value="binarize_auc_scorer"><expand macro="secondary_scoring_selection_anormaly" /></when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1337 <when value="binarize_average_precision_scorer"><expand macro="secondary_scoring_selection_anormaly" /></when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1338 </conditional> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1339 </xml> |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
parents:
7
diff
changeset
|
1340 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1341 <xml name="scoring_selection_options"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1342 <option value="accuracy">Classification -- 'accuracy'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1343 <option value="balanced_accuracy">Classification -- 'balanced_accuracy'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1344 <option value="average_precision">Classification -- 'average_precision'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1345 <option value="f1">Classification -- 'f1'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1346 <option value="f1_micro">Classification -- 'f1_micro'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1347 <option value="f1_macro">Classification -- 'f1_macro'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1348 <option value="f1_weighted">Classification -- 'f1_weighted'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1349 <option value="f1_samples">Classification -- 'f1_samples'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1350 <option value="neg_log_loss">Classification -- 'neg_log_loss'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1351 <option value="precision">Classification -- 'precision'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1352 <option value="precision_micro">Classification -- 'precision_micro'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1353 <option value="precision_macro">Classification -- 'precision_macro'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1354 <option value="precision_wighted">Classification -- 'precision_wighted'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1355 <option value="precision_samples">Classification -- 'precision_samples'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1356 <option value="recall">Classification -- 'recall'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1357 <option value="recall_micro">Classification -- 'recall_micro'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1358 <option value="recall_macro">Classification -- 'recall_macro'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1359 <option value="recall_wighted">Classification -- 'recall_wighted'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1360 <option value="recall_samples">Classification -- 'recall_samples'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1361 <option value="roc_auc">Classification -- 'roc_auc'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1362 <option value="explained_variance">Regression -- 'explained_variance'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1363 <option value="neg_mean_absolute_error">Regression -- 'neg_mean_absolute_error'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1364 <option value="neg_mean_squared_error">Regression -- 'neg_mean_squared_error'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1365 <option value="neg_mean_squared_log_error">Regression -- 'neg_mean_squared_log_error'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1366 <option value="neg_median_absolute_error">Regression -- 'neg_median_absolute_error'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1367 <option value="r2">Regression -- 'r2'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1368 <option value="max_error">Regression -- 'max_error'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1369 <option value="spearman_correlation">Regression -- Spearman's rank correlation coefficient</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1370 <option value="binarize_auc_scorer">anomaly detection -- binarize_auc_scorer</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1371 <option value="binarize_average_precision_scorer">anomaly detection -- binarize_average_precision_scorer</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1372 </xml> |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
parents:
7
diff
changeset
|
1373 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1374 <xml name="secondary_scoring_selection_classification"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1375 <param name="secondary_scoring" type="select" multiple="true" label="Additional scoring used in multi-metric mode:" help="If the same metric with the primary is chosen, the metric will be ignored."> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1376 <option value="accuracy">Classification -- 'accuracy'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1377 <option value="balanced_accuracy">Classification -- 'balanced_accuracy'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1378 <option value="average_precision">Classification -- 'average_precision'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1379 <option value="f1">Classification -- 'f1'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1380 <option value="f1_micro">Classification -- 'f1_micro'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1381 <option value="f1_macro">Classification -- 'f1_macro'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1382 <option value="f1_weighted">Classification -- 'f1_weighted'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1383 <option value="f1_samples">Classification -- 'f1_samples'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1384 <option value="neg_log_loss">Classification -- 'neg_log_loss'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1385 <option value="precision">Classification -- 'precision'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1386 <option value="precision_micro">Classification -- 'precision_micro'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1387 <option value="precision_macro">Classification -- 'precision_macro'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1388 <option value="precision_wighted">Classification -- 'precision_wighted'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1389 <option value="precision_samples">Classification -- 'precision_samples'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1390 <option value="recall">Classification -- 'recall'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1391 <option value="recall_micro">Classification -- 'recall_micro'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1392 <option value="recall_macro">Classification -- 'recall_macro'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1393 <option value="recall_wighted">Classification -- 'recall_wighted'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1394 <option value="recall_samples">Classification -- 'recall_samples'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1395 <option value="roc_auc">Classification -- 'roc_auc'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1396 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1397 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1398 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1399 <xml name="secondary_scoring_selection_regression"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1400 <param name="secondary_scoring" type="select" multiple="true" label="Additional scoring used in multi-metric mode:" help="If the same metric with the primary is chosen, the metric will be ignored."> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1401 <option value="explained_variance">Regression -- 'explained_variance'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1402 <option value="neg_mean_absolute_error">Regression -- 'neg_mean_absolute_error'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1403 <option value="neg_mean_squared_error">Regression -- 'neg_mean_squared_error'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1404 <option value="neg_mean_squared_log_error">Regression -- 'neg_mean_squared_log_error'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1405 <option value="neg_median_absolute_error">Regression -- 'neg_median_absolute_error'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1406 <option value="r2">Regression -- 'r2'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1407 <option value="max_error">Regression -- 'max_error'</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1408 <option value="spearman_correlation">Regression -- Spearman's rank correlation coefficient</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1409 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1410 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1411 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1412 <xml name="secondary_scoring_selection_anormaly"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1413 <param name="secondary_scoring" type="select" multiple="true" label="Additional scoring used in multi-metric mode:" help="If the same metric with the primary is chosen, the metric will be ignored."> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1414 <expand macro="scoring_selection_options" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1415 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1416 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1417 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1418 <xml name="pre_dispatch" token_type="hidden" token_default_value="all" token_help="Number of predispatched jobs for parallel execution"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1419 <param argument="pre_dispatch" type="@TYPE@" value="@DEFAULT_VALUE@" optional="true" label="pre_dispatch" help="@HELP@" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1420 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1421 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1422 <xml name="estimator_and_hyperparameter"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1423 <param name="infile_estimator" type="data" format="h5mlm" label="Choose the dataset containing pipeline/estimator object" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1424 <section name="hyperparams_swapping" title="Hyperparameter Swapping" expanded="false"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1425 <repeat name="param_set" min="1" max="30" title="New hyperparameter setting"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1426 <param name="sp_name" type="select" optional="true" label="Choose a parameter name (with current value)"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1427 <options from_dataset="infile_estimator" meta_file_key="hyper_params" startswith="@"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1428 <column name="name" index="2" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1429 <column name="value" index="1" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1430 <filter type="unique_value" name="unique_param" column="1" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1431 </options> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1432 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1433 <param name="sp_value" type="text" value="" optional="true" label="New value" help="Supports int, float, boolean, single quoted string, and selected object constructor. Similar to the `Parameter settings for search` section in `searchcv` tool except that only single value is expected here."> |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
parents:
7
diff
changeset
|
1434 <sanitizer> |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1435 <valid initial="default"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1436 <add value="'" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1437 <add value=""" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1438 </valid> |
9
ead7adad8d0e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit e2a5eade6d0e5ddf3a47630381a0ad90d80e8a04"
bgruening
parents:
7
diff
changeset
|
1439 </sanitizer> |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1440 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1441 </repeat> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1442 </section> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1443 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
1444 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1445 <xml name="search_cv_options"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1446 <expand macro="scoring_selection" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1447 <expand macro="model_validation_common_options" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1448 <!--expand macro="pre_dispatch" default_value="2*n_jobs" help="Controls the number of jobs that get dispatched during parallel execution"/--> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1449 <!--param argument="iid" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="true" label="iid" help="If True, data is identically distributed across the folds" />--> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1450 <!--param argument="refit" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="true" label="refit" help="Refit an estimator using the best found parameters on the whole dataset. Be aware that `refit=True` invokes extra computation, but it's REQUIRED for outputting the best estimator!" /> --> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1451 <param argument="error_score" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="true" label="Raise fit error:" help="If false, the metric score is assigned to NaN if an error occurs in estimator fitting and FitFailedWarning is raised." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1452 <param argument="return_train_score" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="false" label="return_train_score" help="" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1453 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
1454 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1455 <xml name="estimator_module_options"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1456 <option value="svm" selected="true">sklearn.svm</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1457 <option value="linear_model">sklearn.linear_model</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1458 <option value="ensemble">sklearn.ensemble</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1459 <option value="naive_bayes">sklearn.naive_bayes</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1460 <option value="tree">sklearn.tree</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1461 <option value="neighbors">sklearn.neighbors</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1462 <option value="xgboost">xgboost</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1463 <yield /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1464 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
1465 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1466 <xml name="estimator_suboptions"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1467 <when value="svm"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1468 <param name="selected_estimator" type="select" label="Choose estimator class:"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1469 <option value="LinearSVC" selected="true">LinearSVC</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1470 <option value="LinearSVR">LinearSVR</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1471 <option value="NuSVC">NuSVC</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1472 <option value="NuSVR">NuSVR</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1473 <option value="OneClassSVM">OneClassSVM</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1474 <option value="SVC">SVC</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1475 <option value="SVR">SVR</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1476 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1477 <expand macro="estimator_params_text" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1478 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1479 <when value="linear_model"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1480 <param name="selected_estimator" type="select" label="Choose estimator class:"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1481 <option value="ARDRegression" selected="true">ARDRegression</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1482 <option value="BayesianRidge">BayesianRidge</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1483 <option value="ElasticNet">ElasticNet</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1484 <option value="ElasticNetCV">ElasticNetCV</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1485 <option value="HuberRegressor">HuberRegressor</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1486 <option value="Lars">Lars</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1487 <option value="LarsCV">LarsCV</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1488 <option value="Lasso">Lasso</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1489 <option value="LassoCV">LassoCV</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1490 <option value="LassoLars">LassoLars</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1491 <option value="LassoLarsCV">LassoLarsCV</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1492 <option value="LassoLarsIC">LassoLarsIC</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1493 <option value="LinearRegression">LinearRegression</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1494 <option value="LogisticRegression">LogisticRegression</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1495 <option value="LogisticRegressionCV">LogisticRegressionCV</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1496 <option value="MultiTaskLasso">MultiTaskLasso</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1497 <option value="MultiTaskElasticNet">MultiTaskElasticNet</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1498 <option value="MultiTaskLassoCV">MultiTaskLassoCV</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1499 <option value="MultiTaskElasticNetCV">MultiTaskElasticNetCV</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1500 <option value="OrthogonalMatchingPursuit">OrthogonalMatchingPursuit</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1501 <option value="OrthogonalMatchingPursuitCV">OrthogonalMatchingPursuitCV</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1502 <option value="PassiveAggressiveClassifier">PassiveAggressiveClassifier</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1503 <option value="PassiveAggressiveRegressor">PassiveAggressiveRegressor</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1504 <option value="Perceptron">Perceptron</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1505 <option value="RANSACRegressor">RANSACRegressor</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1506 <option value="Ridge">Ridge</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1507 <option value="RidgeClassifier">RidgeClassifier</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1508 <option value="RidgeClassifierCV">RidgeClassifierCV</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1509 <option value="RidgeCV">RidgeCV</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1510 <option value="SGDClassifier">SGDClassifier</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1511 <option value="SGDRegressor">SGDRegressor</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1512 <option value="TheilSenRegressor">TheilSenRegressor</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1513 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1514 <expand macro="estimator_params_text" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1515 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1516 <when value="ensemble"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1517 <param name="selected_estimator" type="select" label="Choose estimator class:"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1518 <option value="AdaBoostClassifier" selected="true">AdaBoostClassifier</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1519 <option value="AdaBoostRegressor">AdaBoostRegressor</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1520 <option value="BaggingClassifier">BaggingClassifier</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1521 <option value="BaggingRegressor">BaggingRegressor</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1522 <option value="ExtraTreesClassifier">ExtraTreesClassifier</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1523 <option value="ExtraTreesRegressor">ExtraTreesRegressor</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1524 <option value="GradientBoostingClassifier">GradientBoostingClassifier</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1525 <option value="GradientBoostingRegressor">GradientBoostingRegressor</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1526 <option value="IsolationForest">IsolationForest</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1527 <option value="HistGradientBoostingClassifier">HistGradientBoostingClassifier</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1528 <option value="HistGradientBoostingRegressor">HistGradientBoostingRegressor</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1529 <option value="RandomForestClassifier">RandomForestClassifier</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1530 <option value="RandomForestRegressor">RandomForestRegressor</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1531 <option value="RandomTreesEmbedding">RandomTreesEmbedding</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1532 <!--option value="VotingClassifier">VotingClassifier</option--> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1533 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1534 <expand macro="estimator_params_text" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1535 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1536 <when value="naive_bayes"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1537 <param name="selected_estimator" type="select" label="Choose estimator class:"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1538 <option value="BernoulliNB" selected="true">BernoulliNB</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1539 <option value="GaussianNB">GaussianNB</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1540 <option value="MultinomialNB">MultinomialNB</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1541 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1542 <expand macro="estimator_params_text" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1543 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1544 <when value="tree"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1545 <param name="selected_estimator" type="select" label="Choose estimator class:"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1546 <option value="DecisionTreeClassifier" selected="true">DecisionTreeClassifier</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1547 <option value="DecisionTreeRegressor">DecisionTreeRegressor</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1548 <option value="ExtraTreeClassifier">ExtraTreeClassifier</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1549 <option value="ExtraTreeRegressor">ExtraTreeRegressor</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1550 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1551 <expand macro="estimator_params_text" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1552 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1553 <when value="neighbors"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1554 <param name="selected_estimator" type="select" label="Choose estimator class:"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1555 <option value="KNeighborsClassifier" selected="true">KNeighborsClassifier</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1556 <option value="KNeighborsRegressor">KNeighborsRegressor</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1557 <!--option value="BallTree">BallTree</option--> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1558 <!--option value="KDTree">KDTree</option--> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1559 <option value="KernelDensity">KernelDensity</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1560 <option value="LocalOutlierFactor">LocalOutlierFactor</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1561 <option value="RadiusNeighborsClassifier">RadiusNeighborsClassifier</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1562 <option value="RadiusNeighborsRegressor">RadiusNeighborsRegressor</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1563 <option value="NearestCentroid">NearestCentroid</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1564 <option value="NearestNeighbors">NearestNeighbors</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1565 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1566 <expand macro="estimator_params_text" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1567 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1568 <when value="xgboost"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1569 <param name="selected_estimator" type="select" label="Choose estimator class:"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1570 <option value="XGBRegressor" selected="true">XGBRegressor</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1571 <option value="XGBClassifier">XGBClassifier</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1572 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1573 <expand macro="estimator_params_text" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1574 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1575 <yield /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1576 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1577 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1578 <xml name="estimator_selector_all"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1579 <conditional name="estimator_selector"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1580 <param name="selected_module" type="select" label="Choose the module that contains target estimator:" > |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1581 <expand macro="estimator_module_options" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1582 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1583 <expand macro="estimator_suboptions" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1584 </conditional> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1585 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1586 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1587 <xml name="estimator_selector_fs"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1588 <conditional name="estimator_selector"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1589 <param name="selected_module" type="select" label="Choose the module that contains target estimator:" > |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1590 <expand macro="estimator_module_options"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1591 <option value="custom_estimator">Load a custom estimator</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1592 </expand> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1593 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1594 <expand macro="estimator_suboptions"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1595 <when value="custom_estimator"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1596 <param name="c_estimator" type="data" format="h5mlm" label="Choose the dataset containing the custom estimator or pipeline:" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1597 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1598 </expand> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1599 </conditional> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1600 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1601 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1602 <xml name="estimator_params_text" token_label="Type in parameter settings if different from default:" token_default_value='' |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1603 token_help="Dictionary-capable, e.g., C=1, kernel='linear'. No double quotes. Leave this box blank for default estimator."> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1604 <param name="text_params" type="text" value="@DEFAULT_VALUE@" optional="true" label="@LABEL@" help="@HELP@"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1605 <sanitizer> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1606 <valid initial="default"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1607 <add value="'" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1608 </valid> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1609 </sanitizer> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1610 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1611 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1612 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1613 <xml name="kernel_approximation_all"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1614 <conditional name="kernel_approximation_selector"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1615 <param name="select_algorithm" type="select" label="Choose a kernel approximation algorithm:"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1616 <option value="Nystroem" selected="true">Nystroem</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1617 <option value="RBFSampler">RBFSampler</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1618 <option value="AdditiveChi2Sampler">AdditiveChi2Sampler</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1619 <option value="SkewedChi2Sampler">SkewedChi2Sampler</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1620 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1621 <when value="Nystroem"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1622 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1623 help="Default(=blank): coef0=None, degree=None, gamma=None, kernel='rbf', kernel_params=None, n_components=100, random_state=None. No double quotes" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1624 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1625 <when value="RBFSampler"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1626 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1627 help="Default(=blank): gamma=1.0, n_components=100, random_state=None." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1628 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1629 <when value="AdditiveChi2Sampler"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1630 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1631 help="Default(=blank): sample_interval=None, sample_steps=2." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1632 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1633 <when value="SkewedChi2Sampler"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1634 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1635 help="Default(=blank): n_components=100, random_state=None, skewedness=1.0." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1636 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1637 </conditional> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1638 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
1639 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1640 <xml name="matrix_decomposition_all"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1641 <conditional name="matrix_decomposition_selector"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1642 <param name="select_algorithm" type="select" label="Choose a matrix decomposition algorithm:"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1643 <option value="DictionaryLearning" selected="true">DictionaryLearning</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1644 <option value="FactorAnalysis">FactorAnalysis</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1645 <option value="FastICA">FastICA</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1646 <option value="IncrementalPCA">IncrementalPCA</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1647 <option value="KernelPCA">KernelPCA</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1648 <option value="LatentDirichletAllocation">LatentDirichletAllocation</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1649 <option value="MiniBatchDictionaryLearning">MiniBatchDictionaryLearning</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1650 <option value="MiniBatchSparsePCA">MiniBatchSparsePCA</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1651 <option value="NMF">NMF</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1652 <option value="PCA">PCA</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1653 <option value="SparsePCA">SparsePCA</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1654 <!--option value="SparseCoder">SparseCoder</option--> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1655 <option value="TruncatedSVD">TruncatedSVD</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1656 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1657 <when value="DictionaryLearning"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1658 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1659 help="Default(=blank): alpha=1, code_init=None, dict_init=None, fit_algorithm='lars', max_iter=1000, n_components=None, random_state=None, split_sign=False, tol=1e-08, transform_algorithm='omp', transform_alpha=None, transform_n_nonzero_coefs=None, verbose=False." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1660 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1661 <when value="FactorAnalysis"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1662 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1663 help="Default(=blank): copy=True, iterated_power=3, max_iter=1000, n_components=None, noise_variance_init=None, random_state=0, svd_method='randomized', tol=0.01." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1664 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1665 <when value="FastICA"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1666 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1667 help="Default(=blank): algorithm='parallel', fun='logcosh', fun_args=None, max_iter=200, n_components=None, random_state=None, tol=0.0001, w_init=None, whiten=True. No double quotes." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1668 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1669 <when value="IncrementalPCA"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1670 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1671 help="Default(=blank): batch_size=None, copy=True, n_components=None, whiten=False." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1672 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1673 <when value="KernelPCA"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1674 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1675 help="Default(=blank): alpha=1.0, coef0=1, copy_X=True, degree=3, eigen_solver='auto', fit_inverse_transform=False, gamma=None, kernel='linear', kernel_params=None, max_iter=None, n_components=None, random_state=None, remove_zero_eig=False, tol=0. No double quotes." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1676 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1677 <when value="LatentDirichletAllocation"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1678 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1679 help="Default(=blank): batch_size=128, doc_topic_prior=None, evaluate_every=-1, learning_decay=0.7, learning_method=None, learning_offset=10.0, max_doc_update_iter=100, max_iter=10, mean_change_tol=0.001, n_components=10, n_topics=None, perp_tol=0.1, random_state=None, topic_word_prior=None, total_samples=1000000.0, verbose=0." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1680 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1681 <when value="MiniBatchDictionaryLearning"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1682 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1683 help="Default(=blank): alpha=1, batch_size=3, dict_init=None, fit_algorithm='lars', n_components=None, n_iter=1000, random_state=None, shuffle=True, split_sign=False, transform_algorithm='omp', transform_alpha=None, transform_n_nonzero_coefs=None, verbose=False." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1684 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1685 <when value="MiniBatchSparsePCA"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1686 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1687 help="Default(=blank): alpha=1, batch_size=3, callback=None, method='lars', n_components=None, n_iter=100, random_state=None, ridge_alpha=0.01, shuffle=True, verbose=False." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1688 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1689 <when value="NMF"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1690 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1691 help="Default(=blank): alpha=0.0, beta_loss='frobenius', init=None, l1_ratio=0.0, max_iter=200, n_components=None, random_state=None, shuffle=False, solver='cd', tol=0.0001, verbose=0." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1692 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1693 <when value="PCA"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1694 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1695 help="Default(=blank): copy=True, iterated_power='auto', n_components=None, random_state=None, svd_solver='auto', tol=0.0, whiten=False." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1696 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1697 <when value="SparsePCA"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1698 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1699 help="Default(=blank): U_init=None, V_init=None, alpha=1, max_iter=1000, method='lars', n_components=None, random_state=None, ridge_alpha=0.01, tol=1e-08, verbose=False." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1700 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1701 <when value="TruncatedSVD"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1702 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1703 help="Default(=blank): algorithm='randomized', n_components=2, n_iter=5, random_state=None, tol=0.0." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1704 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1705 </conditional> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1706 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
1707 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1708 <xml name="FeatureAgglomeration"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1709 <conditional name="FeatureAgglomeration_selector"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1710 <param name="select_algorithm" type="select" label="Choose the algorithm:"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1711 <option value="FeatureAgglomeration" selected="true">FeatureAgglomeration</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1712 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1713 <when value="FeatureAgglomeration"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1714 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1715 help="Default(=blank): affinity='euclidean', compute_full_tree='auto', connectivity=None, linkage='ward', memory=None, n_clusters=2, pooling_func=np.mean." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1716 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1717 </conditional> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1718 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1719 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1720 <xml name="skrebate"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1721 <conditional name="skrebate_selector"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1722 <param name="select_algorithm" type="select" label="Choose the algorithm:"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1723 <option value="ReliefF">ReliefF</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1724 <option value="SURF">SURF</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1725 <option value="SURFstar">SURFstar</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1726 <option value="MultiSURF">MultiSURF</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1727 <option value="MultiSURFstar">MultiSURFstar</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1728 <!--option value="TuRF">TuRF</option> --> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1729 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1730 <when value="ReliefF"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1731 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1732 help="Default(=blank): discrete_threshold=10, n_features_to_select=10, n_neighbors=100, verbose=False." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1733 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1734 <when value="SURF"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1735 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1736 help="Default(=blank): discrete_threshold=10, n_features_to_select=10, verbose=False." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1737 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1738 <when value="SURFstar"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1739 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1740 help="Default(=blank): discrete_threshold=10, n_features_to_select=10, verbose=False." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1741 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1742 <when value="MultiSURF"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1743 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1744 help="Default(=blank): discrete_threshold=10, n_features_to_select=10, verbose=False." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1745 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1746 <when value="MultiSURFstar"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1747 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1748 help="Default(=blank): discrete_threshold=10, n_features_to_select=10, verbose=False." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1749 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1750 <!--when value="TuRF"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1751 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1752 help="Default(=blank): core_algorithm='ReliefF', discrete_threshold=10, n_features_to_select=10, n_neighbors=100, pct=0.5, verbose=False." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1753 </when> --> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1754 </conditional> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1755 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
1756 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1757 <xml name="imbalanced_learn_sampling"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1758 <conditional name="imblearn_selector"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1759 <param name="select_algorithm" type="select" label="Choose the algorithm:"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1760 <option value="under_sampling.ClusterCentroids" selected="true">under_sampling.ClusterCentroids</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1761 <option value="under_sampling.CondensedNearestNeighbour">under_sampling.CondensedNearestNeighbour</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1762 <option value="under_sampling.EditedNearestNeighbours">under_sampling.EditedNearestNeighbours</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1763 <option value="under_sampling.RepeatedEditedNearestNeighbours">under_sampling.RepeatedEditedNearestNeighbours</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1764 <option value="under_sampling.AllKNN">under_sampling.AllKNN</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1765 <option value="under_sampling.InstanceHardnessThreshold">under_sampling.InstanceHardnessThreshold</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1766 <option value="under_sampling.NearMiss">under_sampling.NearMiss</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1767 <option value="under_sampling.NeighbourhoodCleaningRule">under_sampling.NeighbourhoodCleaningRule</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1768 <option value="under_sampling.OneSidedSelection">under_sampling.OneSidedSelection</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1769 <option value="under_sampling.RandomUnderSampler">under_sampling.RandomUnderSampler</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1770 <option value="under_sampling.TomekLinks">under_sampling.TomekLinks</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1771 <option value="over_sampling.ADASYN">over_sampling.ADASYN</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1772 <option value="over_sampling.RandomOverSampler">over_sampling.RandomOverSampler</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1773 <option value="over_sampling.SMOTE">over_sampling.SMOTE</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1774 <option value="over_sampling.SVMSMOTE">over_sampling.SVMSMOTE</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1775 <option value="over_sampling.BorderlineSMOTE">over_sampling.BorderlineSMOTE</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1776 <option value="over_sampling.SMOTENC">over_sampling.SMOTENC</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1777 <option value="combine.SMOTEENN">combine.SMOTEENN</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1778 <option value="combine.SMOTETomek">combine.SMOTETomek</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1779 <option value="Z_RandomOverSampler">Z_RandomOverSampler - for regression</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1780 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1781 <when value="under_sampling.ClusterCentroids"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1782 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1783 help="Default(=blank): sampling_strategy='auto', random_state=None, estimator=None, voting='auto'." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1784 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1785 <when value="under_sampling.CondensedNearestNeighbour"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1786 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1787 help="Default(=blank): sampling_strategy='auto', random_state=None, n_neighbors=None, n_seeds_S=1." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1788 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1789 <when value="under_sampling.EditedNearestNeighbours"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1790 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1791 help="Default(=blank): sampling_strategy='auto', random_state=None, n_neighbors=3, max_iter=100, kind_sel='all'." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1792 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1793 <when value="under_sampling.RepeatedEditedNearestNeighbours"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1794 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1795 help="Default(=blank): sampling_strategy='auto', random_state=None, n_neighbors=3, max_iter=100, kind_sel='all'." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1796 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1797 <when value="under_sampling.AllKNN"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1798 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1799 help="Default(=blank): sampling_strategy='auto', random_state=None, n_neighbors=3, kind_sel='all', allow_minority=False." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1800 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1801 <when value="under_sampling.InstanceHardnessThreshold"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1802 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1803 help="Default(=blank): estimator=None, sampling_strategy='auto', random_state=None, cv=5." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1804 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1805 <when value="under_sampling.NearMiss"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1806 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1807 help="Default(=blank): sampling_strategy='auto', random_state=None, version=1, n_neighbors=3, n_neighbors_ver3=3." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1808 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1809 <when value="under_sampling.NeighbourhoodCleaningRule"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1810 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1811 help="Default(=blank): sampling_strategy='auto', random_state=None, n_neighbors=3, kind_sel='all', threshold_cleaning=0.5." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1812 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1813 <when value="under_sampling.OneSidedSelection"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1814 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1815 help="Default(=blank): sampling_strategy='auto', random_state=None, n_neighbors=None, n_seeds_S=1." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1816 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1817 <when value="under_sampling.RandomUnderSampler"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1818 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1819 help="Default(=blank): sampling_strategy='auto', random_state=None, replacement=False." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1820 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1821 <when value="under_sampling.TomekLinks"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1822 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1823 help="Default(=blank): sampling_strategy='auto', random_state=None." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1824 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1825 <when value="over_sampling.ADASYN"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1826 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1827 help="Default(=blank): sampling_strategy='auto', random_state=None, n_neighbors=5." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1828 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1829 <when value="over_sampling.RandomOverSampler"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1830 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1831 help="Default(=blank): sampling_strategy='auto', random_state=None." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1832 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1833 <when value="over_sampling.SMOTE"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1834 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1835 help="Default(=blank): sampling_strategy='auto', random_state=None, k_neighbors=5." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1836 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1837 <when value="over_sampling.SVMSMOTE"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1838 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1839 help="Default(=blank): sampling_strategy='auto', k_neighbors=5, m_neighbors=10, out_step=0.5, random_state=None, svm_estimator=None." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1840 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1841 <when value="over_sampling.BorderlineSMOTE"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1842 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1843 help="Default(=blank): sampling_strategy='auto', k_neighbors=5, kind='borderline-1', m_neighbors=10, random_state=None." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1844 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1845 <when value="over_sampling.SMOTENC"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1846 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1847 help="Default: categorical_features=[], sampling_strategy='auto', random_state=None, k_neighbors=5." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1848 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1849 <when value="combine.SMOTEENN"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1850 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1851 help="Default(=blank): sampling_strategy='auto', random_state=None, smote=None, enn=None." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1852 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1853 <when value="combine.SMOTETomek"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1854 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1855 help="Default(=blank): sampling_strategy='auto', random_state=None, smote=None, tomek=None." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1856 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1857 <when value="Z_RandomOverSampler"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1858 <expand macro="estimator_params_text" |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1859 help="Default(=blank): sampling_strategy='auto', random_state=None, negative_thres=0, positive_thres=-1." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1860 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1861 </conditional> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1862 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
1863 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1864 <xml name="preprocessors_sequence_encoders"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1865 <conditional name="encoder_selection"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1866 <param name="encoder_type" type="select" label="Choose the sequence encoder class"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1867 <option value="GenomeOneHotEncoder">GenomeOneHotEncoder</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1868 <option value="ProteinOneHotEncoder">ProteinOneHotEncoder</option> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1869 </param> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1870 <when value="GenomeOneHotEncoder"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1871 <expand macro="preprocessors_sequence_encoder_arguments" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1872 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1873 <when value="ProteinOneHotEncoder"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1874 <expand macro="preprocessors_sequence_encoder_arguments" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1875 </when> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1876 </conditional> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1877 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
1878 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1879 <xml name="preprocessors_sequence_encoder_arguments"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1880 <param argument="seq_length" type="integer" value="" min="0" optional="true" help="Integer. Sequence length" /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1881 <param argument="padding" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="true" help="Whether to pad or truncate sequence to meet the sequence length." /> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1882 </xml> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1883 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1884 <!-- Outputs --> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1885 |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1886 <xml name="output"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1887 <outputs> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1888 <data format="tabular" name="outfile_predict"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1889 <filter>selected_tasks['selected_task'] == 'load'</filter> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1890 </data> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1891 <data format="h5mlm" name="outfile_fit" label="${tool.name}.${selected_tasks.selected_algorithms.selected_algorithm}"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1892 <filter>selected_tasks['selected_task'] == 'train'</filter> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1893 </data> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1894 </outputs> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1895 </xml> |
0
68aaa903052a
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
1896 |
15
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1897 <!--Citations--> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1898 <xml name="eden_citation"> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1899 <citations> |
2eb5c017958d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
bgruening
parents:
14
diff
changeset
|
1900 <citation type="doi">10.5281/zenodo.15094</citation> |
2eb5c017958d
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1901 </citations> |
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1902 </xml> |
0
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1903 |
15
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1904 <xml name="sklearn_citation"> |
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1905 <citations> |
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1906 <citation type="bibtex"> |
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1907 @article{scikit-learn, |
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1908 title={Scikit-learn: Machine Learning in {P}ython}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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1909 author={Pedregosa, F. and Varoquaux, G. and Gramfort, A. and Michel, V. |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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1910 and Thirion, B. and Grisel, O. and Blondel, M. and Prettenhofer, P. |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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1911 and Weiss, R. and Dubourg, V. and Vanderplas, J. and Passos, A. and |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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1912 Cournapeau, D. and Brucher, M. and Perrot, M. and Duchesnay, E.}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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1913 journal={Journal of Machine Learning Research}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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1914 volume={12}, |
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1915 pages={2825--2830}, |
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1916 year={2011} |
0
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1917 } |
15
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1918 </citation> |
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1919 <yield /> |
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1920 </citations> |
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1921 </xml> |
0
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1922 |
15
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1923 <xml name="scipy_citation"> |
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1924 <citations> |
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1925 <citation type="bibtex"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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1926 @Misc{, |
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1927 author = {Eric Jones and Travis Oliphant and Pearu Peterson and others}, |
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1928 title = {{SciPy}: Open source scientific tools for {Python}}, |
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1929 year = {2001--}, |
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1930 url = "http://www.scipy.org/", |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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1931 note = {[Online; accessed 2016-04-09]} |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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1932 } |
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1933 </citation> |
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1934 </citations> |
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1935 </xml> |
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1936 |
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1937 <xml name="skrebate_citation"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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1938 <citation type="bibtex"> |
0
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1939 @article{DBLP:journals/corr/abs-1711-08477, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1940 author = {Ryan J. Urbanowicz and |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1941 Randal S. Olson and |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1942 Peter Schmitt and |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1943 Melissa Meeker and |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
1944 Jason H. Moore}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1945 title = {Benchmarking Relief-Based Feature Selection Methods}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1946 journal = {CoRR}, |
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1947 volume = {abs/1711.08477}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1948 year = {2017}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1949 url = {http://arxiv.org/abs/1711.08477}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1950 archivePrefix = {arXiv}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1951 eprint = {1711.08477}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1952 timestamp = {Mon, 13 Aug 2018 16:46:04 +0200}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1953 biburl = {https://dblp.org/rec/bib/journals/corr/abs-1711-08477}, |
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1954 bibsource = {dblp computer science bibliography, https://dblp.org} |
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1955 } |
15
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1956 </citation> |
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1957 </xml> |
0
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1958 |
15
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1959 <xml name="xgboost_citation"> |
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1960 <citation type="bibtex"> |
0
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1961 @inproceedings{Chen:2016:XST:2939672.2939785, |
15
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1962 author = {Chen, Tianqi and Guestrin, Carlos}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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1963 title = {{XGBoost}: A Scalable Tree Boosting System}, |
0
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1964 booktitle = {Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining}, |
15
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1965 series = {KDD '16}, |
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1966 year = {2016}, |
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1967 isbn = {978-1-4503-4232-2}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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1968 location = {San Francisco, California, USA}, |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
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1969 pages = {785--794}, |
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1970 numpages = {10}, |
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1971 url = {http://doi.acm.org/10.1145/2939672.2939785}, |
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1972 doi = {10.1145/2939672.2939785}, |
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1973 acmid = {2939785}, |
0
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1974 publisher = {ACM}, |
15
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1975 address = {New York, NY, USA}, |
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1976 keywords = {large-scale machine learning}, |
0
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|
1977 } |
15
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|
1978 </citation> |
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1979 </xml> |
0
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|
1980 |
15
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|
1981 <xml name="imblearn_citation"> |
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|
1982 <citation type="bibtex"> |
0
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|
1983 @article{JMLR:v18:16-365, |
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1984 author = {Guillaume Lema{{\^i}}tre and Fernando Nogueira and Christos K. Aridas}, |
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1985 title = {Imbalanced-learn: A Python Toolbox to Tackle the Curse of Imbalanced Datasets in Machine Learning}, |
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1986 journal = {Journal of Machine Learning Research}, |
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1987 year = {2017}, |
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1988 volume = {18}, |
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1989 number = {17}, |
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1990 pages = {1-5}, |
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1991 url = {http://jmlr.org/papers/v18/16-365.html} |
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1992 } |
15
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1993 </citation> |
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1994 </xml> |
0
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1995 |
15
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1996 <xml name="selene_citation"> |
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1997 <citation type="bibtex"> |
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1998 @article{chen2019selene, |
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1999 title={Selene: a PyTorch-based deep learning library for sequence data}, |
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2000 author={Chen, Kathleen M and Cofer, Evan M and Zhou, Jian and Troyanskaya, Olga G}, |
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2001 journal={Nature methods}, |
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2002 volume={16}, |
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2003 number={4}, |
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2004 pages={315}, |
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2005 year={2019}, |
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2006 publisher={Nature Publishing Group} |
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2007 } |
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2008 </citation> |
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2009 </xml> |
0
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2010 |
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2011 </macros> |