diff test-data/lgb_regr_model.txt @ 15:2eb5c017958d draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 9981e25b00de29ed881b2229a173a8c812ded9bb
author bgruening
date Wed, 09 Aug 2023 13:15:27 +0000
parents bde62c243b7e
children
line wrap: on
line diff
--- a/test-data/lgb_regr_model.txt	Thu Aug 11 09:13:40 2022 +0000
+++ b/test-data/lgb_regr_model.txt	Wed Aug 09 13:15:27 2023 +0000
@@ -7,180034 +7,1937 @@
 objective=regression
 feature_names=Column_0 Column_1 Column_2 Column_3 Column_4 Column_5 Column_6 Column_7 Column_8 Column_9 Column_10 Column_11 Column_12 Column_13 Column_14 Column_15 Column_16
 feature_infos=none [1:12] [1:31] [35:89] [35:117] [45.100000000000001:77.400000000000006] [41:77] [46:81] [44:79] [28:95] [0:1] [0:1] [0:1] [0:1] [0:1] [0:1] [0:1]
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+decision_type=2 2 2
+left_child=-1 2 -2
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+leaf_count=78 65 40 78
+internal_value=0 0.0195117 0.00806927
+internal_weight=0 183 143
+internal_count=261 183 143
+is_linear=0
 shrinkage=0.02
 
 
-Tree=9986
-num_leaves=5
-num_cat=0
-split_feature=3 1 4 2
-split_gain=0.0895987 0.399904 0.716658 0.555104
-threshold=71.500000000000014 8.5000000000000018 55.500000000000007 17.500000000000004
-decision_type=2 2 2 2
-left_child=1 2 -1 -3
-right_child=-2 3 -4 -5
-leaf_value=-0.0009713876518650733 -0.00071870166587419332 -0.0022685632295015327 0.0023712379911052716 0.00098964941098862724
-leaf_weight=43 64 48 67 39
-leaf_count=43 64 48 67 39
-internal_value=0 0.0116753 0.052876 -0.0399588
-internal_weight=0 197 110 87
-internal_count=261 197 110 87
-shrinkage=0.02
-
-
-Tree=9987
-num_leaves=5
-num_cat=0
-split_feature=3 1 4 2
-split_gain=0.085244 0.383165 0.687604 0.532428
-threshold=71.500000000000014 8.5000000000000018 55.500000000000007 17.500000000000004
-decision_type=2 2 2 2
-left_child=1 2 -1 -3
-right_child=-2 3 -4 -5
-leaf_value=-0.00095199147772562047 -0.00070434318999311419 -0.0022232580654259555 0.0023238628467402446 0.00096989209408768608
-leaf_weight=43 64 48 67 39
-leaf_count=43 64 48 67 39
-internal_value=0 0.0114378 0.0518121 -0.0391514
-internal_weight=0 197 110 87
-internal_count=261 197 110 87
-shrinkage=0.02
-
-
-Tree=9988
-num_leaves=6
+Tree=98
+num_leaves=4
 num_cat=0
-split_feature=4 9 5 2 7
-split_gain=0.0851842 0.619223 1.18985 1.0302 0.550525
-threshold=51.500000000000007 57.500000000000007 53.500000000000007 18.500000000000004 72.500000000000014
-decision_type=2 2 2 2 2
-left_child=-1 2 -2 4 -3
-right_child=1 3 -4 -5 -6
-leaf_value=0.00084483133065172311 -0.004127541595113104 -0.0024764482764188327 0.00077655517738580066 0.0028393598968826134 0.00088952018713635761
-leaf_weight=48 39 40 41 53 40
-leaf_count=48 39 40 41 53 40
-internal_value=0 -0.00954459 -0.080286 0.0327259 -0.0392083
-internal_weight=0 213 80 133 80
-internal_count=261 213 80 133 80
-shrinkage=0.02
-
-
-Tree=9989
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-split_feature=9 1 9 7
-split_gain=0.0865628 0.218673 0.320457 0.131897
-threshold=67.500000000000014 9.5000000000000018 56.500000000000007 72.500000000000014
-decision_type=2 2 2 2
-left_child=1 2 -1 -2
-right_child=3 -3 -4 -5
-leaf_value=-0.00011313559564584616 0.00032979684319067769 -0.00067035951790894634 0.0021180743237425338 -0.001344575266727146
-leaf_weight=62 39 65 48 47
-leaf_count=62 39 65 48 47
-internal_value=0 0.0141581 0.0426972 -0.0288161
-internal_weight=0 175 110 86
-internal_count=261 175 110 86
-shrinkage=0.02
-
-
-Tree=9990
-num_leaves=5
-num_cat=0
-split_feature=3 1 4 6
-split_gain=0.0870076 0.511269 1.04409 0.339427
-threshold=52.500000000000007 6.5000000000000009 69.500000000000014 57.500000000000007
-decision_type=2 2 2 2
-left_child=-1 3 -3 -2
-right_child=1 2 -4 -5
-leaf_value=0.00077408404774008443 -0.0024086284519833018 0.0027740439247541425 -0.0012444907714368996 -0
-leaf_weight=56 52 53 52 48
-leaf_count=56 52 53 52 48
-internal_value=0 -0.0105936 0.0388398 -0.0628892
-internal_weight=0 205 105 100
-internal_count=261 205 105 100
-shrinkage=0.02
-
-
-Tree=9991
-num_leaves=5
-num_cat=0
-split_feature=9 8 9 2
-split_gain=0.0867388 0.28049 0.275525 0.528453
-threshold=55.500000000000007 49.500000000000007 61.500000000000007 19.500000000000004
-decision_type=2 2 2 2
-left_child=1 -1 -2 -4
-right_child=2 -3 3 -5
-leaf_value=0.0017737552419128399 -0.0016697736734911292 -0.0004764447024259133 -0.00086660917777482975 0.001899479644039469
-leaf_weight=43 46 52 73 47
-leaf_count=43 46 52 73 47
-internal_value=0 0.0267104 -0.0153071 0.0105294
-internal_weight=0 95 166 120
-internal_count=261 95 166 120
+split_feature=6 7 4
+split_gain=561.401 209.215 48.1111
+threshold=48.500000000000007 76.500000000000014 67.500000000000014
+decision_type=2 2 2
+left_child=-1 2 -2
+right_child=1 -3 -4
+leaf_value=-0.045323261236137537 -0.0012403626046866511 0.060051580489612393 0.022403677239155671
+leaf_weight=77 89 39 56
+leaf_count=77 89 39 56
+internal_value=0 0.0189706 0.00789202
+internal_weight=0 184 145
+internal_count=261 184 145
+is_linear=0
 shrinkage=0.02
 
 
-Tree=9992
-num_leaves=5
-num_cat=0
-split_feature=9 9 9 2
-split_gain=0.0824763 0.271388 0.263825 0.506779
-threshold=55.500000000000007 41.500000000000007 61.500000000000007 19.500000000000004
-decision_type=2 2 2 2
-left_child=1 -1 -2 -4
-right_child=2 -3 3 -5
-leaf_value=-0.00068129068586066284 -0.0016364292283236189 0.0015344814289685333 -0.00084929386379414688 0.0018615465409957174
-leaf_weight=43 46 52 73 47
-leaf_count=43 46 52 73 47
-internal_value=0 0.0261687 -0.0150013 0.0103128
-internal_weight=0 95 166 120
-internal_count=261 95 166 120
-shrinkage=0.02
-
-
-Tree=9993
-num_leaves=6
-num_cat=0
-split_feature=9 2 5 4 3
-split_gain=0.083992 0.358298 0.507625 0.369569 0.259852
-threshold=42.500000000000007 12.500000000000002 53.95000000000001 67.500000000000014 66.500000000000014
-decision_type=2 2 2 2 2
-left_child=-1 3 -3 -2 -4
-right_child=1 2 4 -5 -6
-leaf_value=0.00082939195546691854 0.0022114901908763889 -0.0027786929063854117 0.0012537082030488183 -0.00051513148030428977 -0.0010046257933522501
-leaf_weight=49 42 40 39 41 50
-leaf_count=49 42 40 39 41 50
-internal_value=0 -0.00961487 -0.0436435 0.0427838 -0.000291475
-internal_weight=0 212 129 83 89
-internal_count=261 212 129 83 89
-shrinkage=0.02
-
-
-Tree=9994
-num_leaves=5
-num_cat=0
-split_feature=9 1 9 6
-split_gain=0.082182 0.231743 0.318784 0.114402
-threshold=67.500000000000014 9.5000000000000018 56.500000000000007 67.500000000000014
-decision_type=2 2 2 2
-left_child=1 2 -1 -2
-right_child=3 -3 -4 -5
-leaf_value=-0.00010134627320867472 0.00015728727400315828 -0.00070247958287017345 0.0021242061802477655 -0.001413439896737723
-leaf_weight=62 46 65 48 40
-leaf_count=62 46 65 48 40
-internal_value=0 0.0138544 0.0431635 -0.0282272
-internal_weight=0 175 110 86
-internal_count=261 175 110 86
-shrinkage=0.02
-
-
-Tree=9995
-num_leaves=5
+Tree=99
+num_leaves=4
 num_cat=0
-split_feature=3 1 4 9
-split_gain=0.0820278 0.500473 0.991657 0.429361
-threshold=52.500000000000007 6.5000000000000009 69.500000000000014 66.500000000000014
-decision_type=2 2 2 2
-left_child=-1 3 -3 -2
-right_child=1 2 -4 -5
-leaf_value=0.00075566499665265241 -0.0023154336288241958 0.0027189359208700547 -0.0011991007566317525 0.0004167319863218464
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-leaf_count=56 61 53 52 39
-internal_value=0 -0.0103538 0.0385727 -0.0621174
-internal_weight=0 205 105 100
-internal_count=261 205 105 100
-shrinkage=0.02
-
-
-Tree=9996
-num_leaves=5
-num_cat=0
-split_feature=1 2 4 2
-split_gain=0.0891822 0.619853 1.25777 0.484518
-threshold=8.5000000000000018 17.500000000000004 69.500000000000014 17.500000000000004
-decision_type=2 2 2 2
-left_child=1 2 -1 -2
-right_child=3 -3 -4 -5
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-leaf_count=57 54 68 41 41
-internal_value=0 0.0154562 0.0673435 -0.0270395
-internal_weight=0 166 98 95
-internal_count=261 166 98 95
-shrinkage=0.02
-
-
-Tree=9997
-num_leaves=5
-num_cat=0
-split_feature=1 2 4 2
-split_gain=0.084772 0.594484 1.20735 0.46461
-threshold=8.5000000000000018 17.500000000000004 69.500000000000014 17.500000000000004
-decision_type=2 2 2 2
-left_child=1 2 -1 -2
-right_child=3 -3 -4 -5
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-internal_value=0 0.0151378 0.0659898 -0.0264908
-internal_weight=0 166 98 95
-internal_count=261 166 98 95
-shrinkage=0.02
-
-
-Tree=9998
-num_leaves=5
-num_cat=0
-split_feature=6 9 2 1
-split_gain=0.0814517 0.423897 0.49947 0.560638
-threshold=69.500000000000014 71.500000000000014 13.500000000000002 4.5000000000000009
-decision_type=2 2 2 2
-left_child=1 2 -1 -4
-right_child=-2 -3 3 -5
-leaf_value=0.0015287226576175053 0.00082953833355114027 -0.0021162448255171214 0.0011383155735161057 -0.0019402952165041626
-leaf_weight=73 48 39 41 60
-leaf_count=73 48 39 41 60
-internal_value=0 -0.00938209 0.0120356 -0.0341362
-internal_weight=0 213 174 101
-internal_count=261 213 174 101
-shrinkage=0.02
-
-
-Tree=9999
-num_leaves=5
-num_cat=0
-split_feature=5 5 4 9
-split_gain=0.0787592 0.317423 0.245512 0.291236
-threshold=70.000000000000014 64.200000000000003 60.500000000000007 45.500000000000007
-decision_type=2 2 2 2
-left_child=1 2 3 -1
-right_child=-2 -3 -4 -5
-leaf_value=0.00095524065220772586 0.00069620116702481252 -0.001859639079375311 0.0015142907661079197 -0.0011629911884827296
-leaf_weight=46 62 40 44 69
-leaf_count=46 62 40 44 69
-internal_value=0 -0.0108758 0.00956023 -0.015434
-internal_weight=0 199 159 115
-internal_count=261 199 159 115
+split_feature=4 4 5
+split_gain=541.805 199.821 100.908
+threshold=55.500000000000007 75.500000000000014 62.400000000000006
+decision_type=2 2 2
+left_child=-1 2 -2
+right_child=1 -3 -4
+leaf_value=-0.044118620957022098 -0.010652577091750966 0.05828552102169432 0.023068054282883416
+leaf_weight=78 65 40 78
+leaf_count=78 65 40 78
+internal_value=0 0.0188084 0.00773719
+internal_weight=0 183 143
+internal_count=261 183 143
+is_linear=0
 shrinkage=0.02
 
 
 end of trees
 
-feature importances:
-Column_9=8322
-Column_2=6585
-Column_5=5272
-Column_4=4915
-Column_6=4114
-Column_3=3831
-Column_1=3507
-Column_7=2717
-Column_8=2340
+feature_importances:
+Column_4=145
+Column_5=52
+Column_7=32
+Column_6=31
+Column_8=19
+Column_2=9
+Column_3=9
+Column_9=3
 
 parameters:
 [boosting: gbdt]
 [objective: regression]
-[metric: ]
+[metric: l2]
 [tree_learner: serial]
 [device_type: cpu]
 [data: ]
 [valid: ]
 [num_iterations: 100]
 [learning_rate: 0.02]
-[num_leaves: 32]
-[num_threads: 0]
-[max_depth: 8]
+[num_leaves: 4]
+[num_threads: 1]
+[deterministic: 0]
+[force_col_wise: 0]
+[force_row_wise: 0]
+[histogram_pool_size: -1]
+[max_depth: 4]
 [min_data_in_leaf: 20]
 [min_sum_hessian_in_leaf: 39]
 [bagging_fraction: 0.9]
@@ -180045,11 +1948,14 @@
 [feature_fraction: 0.9]
 [feature_fraction_bynode: 1]
 [feature_fraction_seed: 26500]
+[extra_trees: 0]
+[extra_seed: 15724]
 [early_stopping_round: 0]
 [first_metric_only: 0]
 [max_delta_step: 0]
 [lambda_l1: 0.04]
 [lambda_l2: 0.07]
+[linear_lambda: 0]
 [min_gain_to_split: 0.02]
 [drop_rate: 0.1]
 [max_drop: 50]
@@ -180066,51 +1972,41 @@
 [max_cat_to_onehot: 4]
 [top_k: 20]
 [monotone_constraints: ]
+[monotone_constraints_method: basic]
+[monotone_penalty: 0]
 [feature_contri: ]
 [forcedsplits_filename: ]
-[forcedbins_filename: ]
 [refit_decay_rate: 0.9]
 [cegb_tradeoff: 1]
 [cegb_penalty_split: 0]
 [cegb_penalty_feature_lazy: ]
 [cegb_penalty_feature_coupled: ]
-[verbosity: -1]
+[path_smooth: 0]
+[interaction_constraints: ]
+[verbosity: 0]
+[saved_feature_importance_type: 0]
+[linear_tree: 0]
 [max_bin: 255]
 [max_bin_by_feature: ]
 [min_data_in_bin: 3]
 [bin_construct_sample_cnt: 200000]
-[histogram_pool_size: -1]
 [data_random_seed: 41]
-[output_model: LightGBM_model.txt]
-[snapshot_freq: -1]
-[input_model: ]
-[output_result: LightGBM_predict_result.txt]
-[initscore_filename: ]
-[valid_data_initscores: ]
-[pre_partition: 0]
+[is_enable_sparse: 1]
 [enable_bundle: 1]
-[max_conflict_rate: 0]
-[is_enable_sparse: 1]
-[sparse_threshold: 0.8]
 [use_missing: 1]
 [zero_as_missing: 0]
+[feature_pre_filter: 1]
+[pre_partition: 0]
 [two_round: 0]
-[save_binary: 0]
 [header: 0]
 [label_column: ]
 [weight_column: ]
 [group_column: ]
 [ignore_column: ]
 [categorical_feature: ]
-[predict_raw_score: 0]
-[predict_leaf_index: 0]
-[predict_contrib: 0]
-[num_iteration_predict: -1]
-[pred_early_stop: 0]
-[pred_early_stop_freq: 10]
-[pred_early_stop_margin: 10]
-[convert_model_language: ]
-[convert_model: gbdt_prediction.cpp]
+[forcedbins_filename: ]
+[precise_float_parser: 0]
+[objective_seed: 19169]
 [num_class: 1]
 [is_unbalance: 0]
 [scale_pos_weight: 1]
@@ -180121,13 +2017,12 @@
 [fair_c: 1]
 [poisson_max_delta_step: 0.7]
 [tweedie_variance_power: 1.5]
-[max_position: 20]
-[lambdamart_norm: 1]
+[lambdarank_truncation_level: 30]
+[lambdarank_norm: 1]
 [label_gain: ]
-[metric_freq: 1]
-[is_provide_training_metric: 0]
 [eval_at: ]
 [multi_error_top_k: 1]
+[auc_mu_weights: ]
 [num_machines: 1]
 [local_listen_port: 12400]
 [time_out: 120]
@@ -180136,6 +2031,7 @@
 [gpu_platform_id: -1]
 [gpu_device_id: -1]
 [gpu_use_dp: 0]
+[num_gpu: 1]
 
 end of parameters