comparison split_file_on_column.xml @ 3:b60f2452580e draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_on_column commit af7f8fd0977384f9b4225d414623bf5d6ce23a7e

2:90b52d8d6f2c

    <requirements>
        <requirement type="package" version="4.1.0">gnu_awk</requirement>
    </requirements>
    <command>
<![CDATA[
        awk -F'\t' '{print > \$$column ".$infile.ext" }' $infile
]]>
    </command>
    <inputs>
        <param format="tabular" name="infile" type="data" label="File to select" />
        <param name="column" label="on column" type="data_column" data_ref="infile" accept_default="true" />
    </inputs>
    <outputs>
        <collection name="split_output" type="list" label="Table split on first column">
            <discover_datasets pattern="__name_and_ext__" directory="." />
        </collection>
    </outputs>
    <!--outputs>
        <data format="input" name="outfile" metadata_source="infile" label="${tool.name} on ${on_string}"/>
    </outputs-->
    <tests>
        <test>
            <param name="infile" value="5cols.tabular" ftype="tabular"/>
            <param name="column" value="5" />
            <output_collection name="split_output" type="list">

3:b60f2452580e

    <requirements>
        <requirement type="package" version="4.1.0">gnu_awk</requirement>
    </requirements>
    <command>
<![CDATA[
        mkdir tmp_out &&
        awk -F'\t' '{print > "tmp_out/"\$$column".$infile.ext" }' $infile
]]>
    </command>
    <inputs>
        <param format="tabular" name="infile" type="data" label="File to select" />
        <param name="column" label="on column" type="data_column" data_ref="infile" accept_default="true" />
    </inputs>
    <outputs>
        <collection name="split_output" type="list" label="Table split on first column">
            <discover_datasets pattern="__name_and_ext__" directory="tmp_out" />
        </collection>
    </outputs>
    <tests>
        <test>
            <param name="infile" value="5cols.tabular" ftype="tabular"/>
            <param name="column" value="5" />
            <output_collection name="split_output" type="list">