# HG changeset patch # User bgruening # Date 1450860648 18000 # Node ID b60f2452580e92ac092e40fd205685cf500d7601 # Parent 90b52d8d6f2cd8b51e080f356cb78f3afe405c9b planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/split_file_on_column commit af7f8fd0977384f9b4225d414623bf5d6ce23a7e diff -r 90b52d8d6f2c -r b60f2452580e split_file_on_column.xml --- a/split_file_on_column.xml Wed Aug 26 07:32:06 2015 -0400 +++ b/split_file_on_column.xml Wed Dec 23 03:50:48 2015 -0500 @@ -5,7 +5,8 @@ </requirements> <command> <![CDATA[ - awk -F'\t' '{print > \$$column ".$infile.ext" }' $infile + mkdir tmp_out && + awk -F'\t' '{print > "tmp_out/"\$$column".$infile.ext" }' $infile ]]> </command> <inputs> @@ -14,12 +15,9 @@ </inputs> <outputs> <collection name="split_output" type="list" label="Table split on first column"> - <discover_datasets pattern="__name_and_ext__" directory="." /> + <discover_datasets pattern="__name_and_ext__" directory="tmp_out" /> </collection> </outputs> - <!--outputs> - <data format="input" name="outfile" metadata_source="infile" label="${tool.name} on ${on_string}"/> - </outputs--> <tests> <test> <param name="infile" value="5cols.tabular" ftype="tabular"/> diff -r 90b52d8d6f2c -r b60f2452580e tool_dependencies.xml --- a/tool_dependencies.xml Wed Aug 26 07:32:06 2015 -0400 +++ b/tool_dependencies.xml Wed Dec 23 03:50:48 2015 -0500 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> <package name="gnu_awk" version="4.1.0"> - <repository changeset_revision="52a8268bb49f" name="package_gnu_awk_4_1_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="f145f856ec57" name="package_gnu_awk_4_1_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency>