Mercurial > repos > bgruening > suite_hicexplorer

comparison repository_dependencies.xml @ 23:2780e9d9353b draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 3e5c2f8ce3e540b0474746a33ee20b4a374dd38c"
author iuc
date Fri, 11 Dec 2020 21:44:49 +0000
parents 7824262c3b45
children 3a757b0ff151
comparison
equal deleted inserted replaced
22:7824262c3b45 23:2780e9d9353b
1 <?xml version="1.0" ?> 1 <?xml version="1.0" ?>
2 <repositories description="HiCExplorer: Set of programs to process, analyze and visualize Hi-C data."> 2 <repositories description="HiCExplorer: Set of programs to process, analyze and visualize Hi-C data.">
3 <repository changeset_revision="5fbf0fd998ce" name="hicexplorer_hicsummatrices" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 3 <repository owner="bgruening" name="hicexplorer_hicaverageregions" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2818b428a5c5"/>
4 <repository changeset_revision="25332cfeac05" name="hicexplorer_hicmergeloops" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 4 <repository owner="bgruening" name="hicexplorer_hicnormalize" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b9d7410b6593"/>
5 <repository changeset_revision="51447a1d38ed" name="hicexplorer_chicviewpointbackgroundmodel" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 5 <repository owner="bgruening" name="hicexplorer_chicviewpoint" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="889194374660"/>
6 <repository changeset_revision="e8dfe346a207" name="hicexplorer_hictransform" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 6 <repository owner="bgruening" name="hicexplorer_hiccorrectmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5443b2b1165f"/>
7 <repository changeset_revision="ad852622d00a" name="hicexplorer_hicfindrestrictionsites" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 7 <repository owner="bgruening" name="hicexplorer_hicplotviewpoint" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="76ad9e40883d"/>
8 <repository changeset_revision="116ddd1627cd" name="hicexplorer_hicfindtads" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 8 <repository owner="bgruening" name="hicexplorer_hicbuildmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="921a2da49a0c"/>
9 <repository changeset_revision="9b7840d527be" name="hicexplorer_hicmergematrixbins" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 9 <repository owner="bgruening" name="hicexplorer_hicquickqc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b8755bb5bc56"/>
10 <repository changeset_revision="61cbee6f3fd0" name="hicexplorer_hicvalidatelocations" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 10 <repository owner="bgruening" name="hicexplorer_hictransform" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="dc25d1f9927b"/>
11 <repository changeset_revision="1cf50a7d0a05" name="hicexplorer_hicdetectloops" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 11 <repository owner="bgruening" name="hicexplorer_hicpca" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0ba4f56a3613"/>
12 <repository changeset_revision="3dafb9693b8c" name="hicexplorer_hicaverageregions" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 12 <repository owner="bgruening" name="hicexplorer_hicplotmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5308ca68ef3d"/>
13 <repository changeset_revision="33868a6f202c" name="hicexplorer_hicplotviewpoint" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 13 <repository owner="bgruening" name="hicexplorer_hicplotsvl" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1923cc7e6bc2"/>
14 <repository changeset_revision="c657edbea349" name="hicexplorer_hicbuildmatrix" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 14 <repository owner="bgruening" name="hicexplorer_hicmergeloops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="8169710bd2fb"/>
15 <repository changeset_revision="cd29c9a2ad55" name="hicexplorer_hicadjustmatrix" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 15 <repository owner="bgruening" name="hicexplorer_hicplotdistvscounts" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c8a6f89921dc"/>
16 <repository changeset_revision="81d061c9276d" name="hicexplorer_hicplotsvl" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 16 <repository owner="bgruening" name="hicexplorer_hicaggregatecontacts" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="8286e361f89c"/>
17 <repository changeset_revision="38fa8a72ece6" name="hicexplorer_chicsignificantinteractions" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 17 <repository owner="bgruening" name="hicexplorer_hicplotaverageregions" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="8f4b98b0f9a9"/>
18 <repository changeset_revision="ace4cbd036c4" name="hicexplorer_hicplotdistvscounts" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 18 <repository owner="bgruening" name="hicexplorer_hicdetectloops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f16ab52334dd"/>
19 <repository changeset_revision="ac7999229ac6" name="hicexplorer_chicplotviewpoint" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 19 <repository owner="bgruening" name="hicexplorer_chicplotviewpoint" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="46793007f090"/>
20 <repository changeset_revision="364a38df1449" name="hicexplorer_hiccorrelate" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 20 <repository owner="bgruening" name="hicexplorer_hicinfo" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="615e9d59a682"/>
21 <repository changeset_revision="a83e4b0074a3" name="hicexplorer_hicinfo" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 21 <repository owner="bgruening" name="hicexplorer_hicfindtads" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="78fb5e286609"/>
22 <repository changeset_revision="7eaa4f72691f" name="hicexplorer_hiccompartmentspolarization" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 22 <repository owner="bgruening" name="hicexplorer_hicconvertformat" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="835d4d727688"/>
23 <repository changeset_revision="abf2ec674f17" name="hicexplorer_hicconvertformat" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 23 <repository owner="bgruening" name="hicexplorer_hicvalidatelocations" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="362942f48dd2"/>
24 <repository changeset_revision="79acdf9d5e1d" name="hicexplorer_hicplotmatrix" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 24 <repository owner="bgruening" name="hicexplorer_chicdifferentialtest" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="8c5cecbfc3aa"/>
25 <repository changeset_revision="e24802b3bbad" name="hicexplorer_hicnormalize" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 25 <repository owner="bgruening" name="hicexplorer_chicaggregatestatistic" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="989cec209ba2"/>
26 <repository changeset_revision="dcc9500b13aa" name="hicexplorer_hiccorrectmatrix" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 26 <repository owner="bgruening" name="hicexplorer_chicqualitycontrol" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="44d6bef89faa"/>
27 <repository changeset_revision="78b70d78a596" name="hicexplorer_chicviewpoint" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 27 <repository owner="bgruening" name="hicexplorer_hicsummatrices" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d78ae621fc63"/>
28 <repository changeset_revision="126abc4b03f1" name="hicexplorer_chicdifferentialtest" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 28 <repository owner="bgruening" name="hicexplorer_chicviewpointbackgroundmodel" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="83570b36593e"/>
29 <repository changeset_revision="d6f5e51e97ec" name="hicexplorer_chicaggregatestatistic" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 29 <repository owner="bgruening" name="hicexplorer_hiccomparematrices" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c48c29d59359"/>
30 <repository changeset_revision="41aab2463ca4" name="hicexplorer_hiccomparematrices" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 30 <repository owner="bgruening" name="hicexplorer_hicmergematrixbins" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9e357a8b2ec3"/>
31 <repository changeset_revision="692b686622b6" name="hicexplorer_chicqualitycontrol" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 31 <repository owner="bgruening" name="hicexplorer_hiccorrelate" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1099d84fcc21"/>
32 <repository changeset_revision="c7f55f65b449" name="hicexplorer_hicpca" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 32 <repository owner="bgruening" name="hicexplorer_hiccompartmentspolarization" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="3afa7d456f61"/>
33 <repository changeset_revision="1b25346775db" name="hicexplorer_hicaggregatecontacts" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 33 <repository owner="bgruening" name="hicexplorer_hicadjustmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="794bd416f6c3"/>
34 <repository changeset_revision="2371fad10021" name="hicexplorer_hicplotaverageregions" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 34 <repository owner="bgruening" name="hicexplorer_chicsignificantinteractions" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6bc82c6d6620"/>
35 <repository changeset_revision="653fa9fa585e" name="hicexplorer_hicquickqc" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu"/> 35 <repository owner="bgruening" name="hicexplorer_hicfindrestrictionsites" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="3f552d62a93a"/>
36 </repositories> 36 </repositories>