Mercurial > repos > bgruening > suite_hicexplorer

comparison repository_dependencies.xml @ 28:429a6d917f50 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
author bgruening
date Wed, 18 Oct 2023 18:35:32 +0000
parents 648b47e284a0
children b797b9063469
comparison
equal deleted inserted replaced
27:648b47e284a0 28:429a6d917f50
1 <?xml version="1.0" ?> 1 <?xml version="1.0" ?>
2 <repositories description="HiCExplorer: Set of programs to process, analyze and visualize Hi-C data."> 2 <repositories description="HiCExplorer: Set of programs to process, analyze and visualize Hi-C data.">
3 <repository owner="bgruening" name="hicexplorer_hichyperoptdetectloops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="89fb1aab755b"/> 3 <repository owner="bgruening" name="hicexplorer_hicnormalize" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6d042c96aceb"/>
4 <repository owner="bgruening" name="hicexplorer_chicqualitycontrol" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="fadd03fbc4f5"/> 4 <repository owner="bgruening" name="hicexplorer_hicmergedomains" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b376ef118807"/>
5 <repository owner="bgruening" name="hicexplorer_hicadjustmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="aeacaf08bd52"/> 5 <repository owner="bgruening" name="hicexplorer_hicplotaverageregions" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ea5d67ec94ab"/>
6 <repository owner="bgruening" name="hicexplorer_hicfindrestrictionsites" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="aa829050d061"/> 6 <repository owner="bgruening" name="hicexplorer_hiccorrelate" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2b4d6a8dab36"/>
7 <repository owner="bgruening" name="hicexplorer_hicplotaverageregions" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f490a6409f3d"/> 7 <repository owner="bgruening" name="hicexplorer_hicmergematrixbins" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="977dc15add20"/>
8 <repository owner="bgruening" name="hicexplorer_chicdifferentialtest" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9d878ac82c0f"/> 8 <repository owner="bgruening" name="hicexplorer_hicsummatrices" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="36dfa2825a59"/>
9 <repository owner="bgruening" name="hicexplorer_chicviewpoint" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="fdcf45efac66"/> 9 <repository owner="bgruening" name="hicexplorer_hicplotsvl" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b4e780e93c91"/>
10 <repository owner="bgruening" name="hicexplorer_hicplotsvl" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="279fb179dae7"/> 10 <repository owner="bgruening" name="hicexplorer_hicbuildmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ed2cca6b5de4"/>
11 <repository owner="bgruening" name="hicexplorer_hiccorrectmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f5a37c3906cc"/> 11 <repository owner="bgruening" name="hicexplorer_hictraintadclassifier" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1ff19476c5a5"/>
12 <repository owner="bgruening" name="hicexplorer_hicdetectloops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0d6c2ff54c76"/> 12 <repository owner="bgruening" name="hicexplorer_chicsignificantinteractions" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="640e0e45518a"/>
13 <repository owner="bgruening" name="hicexplorer_hicaverageregions" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b15d27c440fd"/> 13 <repository owner="bgruening" name="hicexplorer_hichyperoptdetectloops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7f7c6ead2d0d"/>
14 <repository owner="bgruening" name="hicexplorer_hicaggregatecontacts" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e30485c5e93b"/> 14 <repository owner="bgruening" name="hicexplorer_hicaggregatecontacts" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f0216498a666"/>
15 <repository owner="bgruening" name="hicexplorer_chicviewpointbackgroundmodel" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b285586b61a6"/> 15 <repository owner="bgruening" name="hicexplorer_hicplotviewpoint" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="58de3c7c8e89"/>
16 <repository owner="bgruening" name="hicexplorer_chicplotviewpoint" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="43c24d0bd463"/> 16 <repository owner="bgruening" name="hicexplorer_hicadjustmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2dccb6bb0add"/>
17 <repository owner="bgruening" name="hicexplorer_hicdifferentialtad" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="608538d083a2"/> 17 <repository owner="bgruening" name="hicexplorer_chicviewpointbackgroundmodel" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9d02f1819e81"/>
18 <repository owner="bgruening" name="hicexplorer_hicsummatrices" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2a57fc28ef3a"/> 18 <repository owner="bgruening" name="hicexplorer_hiccomparematrices" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="3ee5332bf57c"/>
19 <repository owner="bgruening" name="hicexplorer_chicsignificantinteractions" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6ef732512682"/> 19 <repository owner="bgruening" name="hicexplorer_hicfindrestrictionsites" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6c5097f6d41e"/>
20 <repository owner="bgruening" name="hicexplorer_hicfindtads" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5746d61f0a91"/> 20 <repository owner="bgruening" name="hicexplorer_chicqualitycontrol" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b892fa1fcaec"/>
21 <repository owner="bgruening" name="hicexplorer_hicvalidatelocations" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0ecdd41d707c"/> 21 <repository owner="bgruening" name="hicexplorer_hiccorrectmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ea19190ce5e0"/>
22 <repository owner="bgruening" name="hicexplorer_chicaggregatestatistic" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1eae6fe69bbd"/> 22 <repository owner="bgruening" name="hicexplorer_hicvalidatelocations" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1d201e8378b3"/>
23 <repository owner="bgruening" name="hicexplorer_hicnormalize" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="8ad23dfdaabb"/> 23 <repository owner="bgruening" name="hicexplorer_hicquickqc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="21d859ad4502"/>
24 <repository owner="bgruening" name="hicexplorer_hiccomparematrices" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="826a6ac07f93"/> 24 <repository owner="bgruening" name="hicexplorer_hicinfo" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e4f8fceab96a"/>
25 <repository owner="bgruening" name="hicexplorer_hiccorrelate" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="bab2fa7355d9"/> 25 <repository owner="bgruening" name="hicexplorer_chicaggregatestatistic" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="01c37e54e86e"/>
26 <repository owner="bgruening" name="hicexplorer_hicinfo" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="782e3ae92bc6"/> 26 <repository owner="bgruening" name="hicexplorer_chicplotviewpoint" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="013e53ccc7ac"/>
27 <repository owner="bgruening" name="hicexplorer_hicbuildmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="29f66c353bcb"/> 27 <repository owner="bgruening" name="hicexplorer_chicdifferentialtest" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9d42a6133690"/>
28 <repository owner="bgruening" name="hicexplorer_hicmergedomains" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6f725a516914"/> 28 <repository owner="bgruening" name="hicexplorer_hicinterintratad" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="55b013e59018"/>
29 <repository owner="bgruening" name="hicexplorer_hicmergeloops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="420868438a99"/> 29 <repository owner="bgruening" name="hicexplorer_hicdifferentialtad" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="77d8e0fd162a"/>
30 <repository owner="bgruening" name="hicexplorer_hiccompartmentspolarization" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="bd6e26c47853"/> 30 <repository owner="bgruening" name="hicexplorer_hicfindtads" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ec4b948dc6f0"/>
31 <repository owner="bgruening" name="hicexplorer_hictransform" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="21b3ef2a6a80"/> 31 <repository owner="bgruening" name="hicexplorer_chicexportdata" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="23b8d6b8960c"/>
32 <repository owner="bgruening" name="hicexplorer_hicquickqc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7679948176ef"/> 32 <repository owner="bgruening" name="hicexplorer_hictransform" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f36828ebdc54"/>
33 <repository owner="bgruening" name="hicexplorer_hicconvertformat" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2a24ce221cd7"/> 33 <repository owner="bgruening" name="hicexplorer_hicpca" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="77919cc3618e"/>
34 <repository owner="bgruening" name="hicexplorer_hicpca" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="41dbf4d162a2"/> 34 <repository owner="bgruening" name="hicexplorer_hicdetectloops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0410b6aada45"/>
35 <repository owner="bgruening" name="hicexplorer_hicplotdistvscounts" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a4a413dcc59d"/> 35 <repository owner="bgruening" name="hicexplorer_chicviewpoint" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f881c94fb3b3"/>
36 <repository owner="bgruening" name="hicexplorer_hicplotviewpoint" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7cdc1a2de16e"/> 36 <repository owner="bgruening" name="hicexplorer_hicmergeloops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1511a8ebe906"/>
37 <repository owner="bgruening" name="hicexplorer_hicplotmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9939786dd9c9"/> 37 <repository owner="bgruening" name="hicexplorer_hiccompartmentspolarization" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="3a6a5381db36"/>
38 <repository owner="bgruening" name="hicexplorer_hicmergematrixbins" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4d511437b1e5"/> 38 <repository owner="bgruening" name="hicexplorer_hicplotdistvscounts" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6326cd29c1c3"/>
39 <repository owner="bgruening" name="hicexplorer_hicaverageregions" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c72fa6cb8817"/>
40 <repository owner="bgruening" name="hicexplorer_hicconvertformat" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c0737631eea1"/>
41 <repository owner="bgruening" name="hicexplorer_hicplotmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b63363075c2e"/>
42 <repository owner="bgruening" name="hicexplorer_hictadclassifier" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="887d203233e5"/>
39 </repositories> 43 </repositories>