Mercurial > repos > bgruening > suite_hicexplorer

comparison repository_dependencies.xml @ 30:79dd6caf2658 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 79133bc3739fbcc6c2055d589679aae312161d03
author iuc
date Tue, 05 Nov 2024 00:12:16 +0000
parents b797b9063469
children bf8a4b9bb7d5
comparison
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29:b797b9063469 30:79dd6caf2658
1 <?xml version="1.0" ?> 1 <?xml version="1.0" ?>
2 <repositories description="HiCExplorer: Set of programs to process, analyze and visualize Hi-C data."> 2 <repositories description="HiCExplorer: Set of programs to process, analyze and visualize Hi-C data.">
3 <repository owner="bgruening" name="hicexplorer_hicplotdistvscounts" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="11f39d7f6c64"/> 3 <repository owner="bgruening" name="hicexplorer_hicconvertformat" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a83732c79949"/>
4 <repository owner="bgruening" name="hicexplorer_hicaggregatecontacts" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b05f662f9f35"/> 4 <repository owner="bgruening" name="hicexplorer_hicmergeloops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="910c6a1c3a27"/>
5 <repository owner="bgruening" name="hicexplorer_hicmergedomains" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b6b8c8672756"/> 5 <repository owner="bgruening" name="hicexplorer_hicbuildmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0f611e7d7858"/>
6 <repository owner="bgruening" name="hicexplorer_hicdetectloops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ffc33339cd3e"/> 6 <repository owner="bgruening" name="hicexplorer_chicdifferentialtest" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f1c35f3f310d"/>
7 <repository owner="bgruening" name="hicexplorer_hicinfo" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="51e40e9b6c3c"/> 7 <repository owner="bgruening" name="hicexplorer_hicdetectloops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="bf9379529c3e"/>
8 <repository owner="bgruening" name="hicexplorer_hiccompartmentspolarization" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4401ed529d2c"/> 8 <repository owner="bgruening" name="hicexplorer_chicplotviewpoint" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b9ab56aecd18"/>
9 <repository owner="bgruening" name="hicexplorer_hicadjustmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e06265d204f6"/> 9 <repository owner="bgruening" name="hicexplorer_hicplotviewpoint" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e285920f8585"/>
10 <repository owner="bgruening" name="hicexplorer_hicfindtads" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="755df866ad0c"/> 10 <repository owner="bgruening" name="hicexplorer_hicplotaverageregions" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9b383d429659"/>
11 <repository owner="bgruening" name="hicexplorer_chicviewpointbackgroundmodel" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f963c251ac77"/> 11 <repository owner="bgruening" name="hicexplorer_chicviewpointbackgroundmodel" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c354255ff705"/>
12 <repository owner="bgruening" name="hicexplorer_hiccorrectmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="62b720dceb56"/> 12 <repository owner="bgruening" name="hicexplorer_hicfindrestrictionsites" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f1b3902f8baf"/>
13 <repository owner="bgruening" name="hicexplorer_hiccorrelate" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2786a931cad2"/> 13 <repository owner="bgruening" name="hicexplorer_hicinterintratad" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="32173084d53f"/>
14 <repository owner="bgruening" name="hicexplorer_chicaggregatestatistic" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="fb7068d30ec9"/> 14 <repository owner="bgruening" name="hicexplorer_hicplotmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f741330d4a71"/>
15 <repository owner="bgruening" name="hicexplorer_chicplotviewpoint" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f47ac4a0b337"/> 15 <repository owner="bgruening" name="hicexplorer_hicpca" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1da5f169b491"/>
16 <repository owner="bgruening" name="hicexplorer_hicmergeloops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ed900cd4a0a9"/> 16 <repository owner="bgruening" name="hicexplorer_chicqualitycontrol" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9ea228a9afc8"/>
17 <repository owner="bgruening" name="hicexplorer_hicquickqc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ea8fb5e899e8"/> 17 <repository owner="bgruening" name="hicexplorer_hiccompartmentspolarization" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a315574104c6"/>
18 <repository owner="bgruening" name="hicexplorer_hicconvertformat" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2ba6cee8e4db"/> 18 <repository owner="bgruening" name="hicexplorer_hicplotdistvscounts" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="06ced663d24f"/>
19 <repository owner="bgruening" name="hicexplorer_hicplotviewpoint" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="8d203e74869b"/> 19 <repository owner="bgruening" name="hicexplorer_hichyperoptdetectloops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="bb8849fca57c"/>
20 <repository owner="bgruening" name="hicexplorer_hicdifferentialtad" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5dfba24d7bdd"/> 20 <repository owner="bgruening" name="hicexplorer_hicaverageregions" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="fe3aa71590d5"/>
21 <repository owner="bgruening" name="hicexplorer_hicsummatrices" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1d6af10874d5"/> 21 <repository owner="bgruening" name="hicexplorer_hiccorrectmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="30d7390bc918"/>
22 <repository owner="bgruening" name="hicexplorer_chicdifferentialtest" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="57aeaf6b237d"/> 22 <repository owner="bgruening" name="hicexplorer_hicquickqc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5cbd7a902a8d"/>
23 <repository owner="bgruening" name="hicexplorer_hicfindrestrictionsites" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="972dcccb5bbc"/> 23 <repository owner="bgruening" name="hicexplorer_hicmergematrixbins" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f72063d9426b"/>
24 <repository owner="bgruening" name="hicexplorer_hicbuildmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a4c13ddcc8ee"/> 24 <repository owner="bgruening" name="hicexplorer_hicdifferentialtad" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="07dd436ea686"/>
25 <repository owner="bgruening" name="hicexplorer_hictransform" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="27fe5cd1729c"/> 25 <repository owner="bgruening" name="hicexplorer_chicexportdata" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="cab616fe7e64"/>
26 <repository owner="bgruening" name="hicexplorer_hicnormalize" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f34ab9882252"/> 26 <repository owner="bgruening" name="hicexplorer_hictransform" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1de2276f633f"/>
27 <repository owner="bgruening" name="hicexplorer_chicqualitycontrol" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a63e9713c39d"/> 27 <repository owner="bgruening" name="hicexplorer_hicmergedomains" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4b194e675916"/>
28 <repository owner="bgruening" name="hicexplorer_chicsignificantinteractions" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="45a386d18509"/> 28 <repository owner="bgruening" name="hicexplorer_chicviewpoint" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c4ed35f4f77f"/>
29 <repository owner="bgruening" name="hicexplorer_hicaverageregions" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="8a11d70b6cd8"/> 29 <repository owner="bgruening" name="hicexplorer_hicinfo" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b0f33533181d"/>
30 <repository owner="bgruening" name="hicexplorer_hicplotmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="12d51d7be66f"/> 30 <repository owner="bgruening" name="hicexplorer_hicadjustmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="782bdcb775fb"/>
31 <repository owner="bgruening" name="hicexplorer_hichyperoptdetectloops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="409396ea5cf0"/> 31 <repository owner="bgruening" name="hicexplorer_chicaggregatestatistic" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="952abbc4b1de"/>
32 <repository owner="bgruening" name="hicexplorer_chicexportdata" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="163fd744e235"/> 32 <repository owner="bgruening" name="hicexplorer_hiccomparematrices" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4f9305d3bb34"/>
33 <repository owner="bgruening" name="hicexplorer_hicplotaverageregions" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="dd9988943f53"/> 33 <repository owner="bgruening" name="hicexplorer_hicplotsvl" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="beb5b5917d2f"/>
34 <repository owner="bgruening" name="hicexplorer_hicinterintratad" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c261b6b05ee3"/> 34 <repository owner="bgruening" name="hicexplorer_hicfindtads" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="11de0d28ab30"/>
35 <repository owner="bgruening" name="hicexplorer_hicplotsvl" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="337705015ee8"/> 35 <repository owner="bgruening" name="hicexplorer_hicnormalize" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2aa5b6b65197"/>
36 <repository owner="bgruening" name="hicexplorer_hicvalidatelocations" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="11a3385e03b5"/> 36 <repository owner="bgruening" name="hicexplorer_chicsignificantinteractions" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f8320df1866b"/>
37 <repository owner="bgruening" name="hicexplorer_hicpca" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c3e5e2cf12b7"/> 37 <repository owner="bgruening" name="hicexplorer_hicvalidatelocations" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="cef9fb4ece1c"/>
38 <repository owner="bgruening" name="hicexplorer_chicviewpoint" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="40fee49bc6c3"/> 38 <repository owner="bgruening" name="hicexplorer_hiccorrelate" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="cd40ca76865a"/>
39 <repository owner="bgruening" name="hicexplorer_hicmergematrixbins" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="11fa44ee0603"/> 39 <repository owner="bgruening" name="hicexplorer_hicaggregatecontacts" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="63c8377c58b3"/>
40 <repository owner="bgruening" name="hicexplorer_hiccomparematrices" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e03780179ee5"/> 40 <repository owner="bgruening" name="hicexplorer_hicsummatrices" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f81750434d70"/>
41 </repositories> 41 </repositories>