Mercurial > repos > bgruening > suite_hicexplorer

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 63179f3d35e5dec09cdd01c07c6a4e8af3da777d
author bgruening
date Fri, 06 Dec 2024 09:51:54 +0000
parents 79dd6caf2658
children
comparison
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30:79dd6caf2658 31:bf8a4b9bb7d5
1 <?xml version="1.0" ?> 1 <?xml version="1.0" ?>
2 <repositories description="HiCExplorer: Set of programs to process, analyze and visualize Hi-C data."> 2 <repositories description="HiCExplorer: Set of programs to process, analyze and visualize Hi-C data.">
3 <repository owner="bgruening" name="hicexplorer_hicconvertformat" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a83732c79949"/> 3 <repository owner="bgruening" name="hicexplorer_hichyperoptdetectloops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="3e5c86c2f80d"/>
4 <repository owner="bgruening" name="hicexplorer_hicmergeloops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="910c6a1c3a27"/> 4 <repository owner="bgruening" name="hicexplorer_hicaggregatecontacts" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="30677e95bc89"/>
5 <repository owner="bgruening" name="hicexplorer_hicbuildmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0f611e7d7858"/> 5 <repository owner="bgruening" name="hicexplorer_hicvalidatelocations" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d890828ab02a"/>
6 <repository owner="bgruening" name="hicexplorer_chicdifferentialtest" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f1c35f3f310d"/> 6 <repository owner="bgruening" name="hicexplorer_hicdifferentialtad" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4977f65da0ff"/>
7 <repository owner="bgruening" name="hicexplorer_hicdetectloops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="bf9379529c3e"/> 7 <repository owner="bgruening" name="hicexplorer_chicdifferentialtest" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="45828071edc3"/>
8 <repository owner="bgruening" name="hicexplorer_chicplotviewpoint" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b9ab56aecd18"/> 8 <repository owner="bgruening" name="hicexplorer_hicfindrestrictionsites" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f0b1bd38745a"/>
9 <repository owner="bgruening" name="hicexplorer_hicplotviewpoint" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e285920f8585"/> 9 <repository owner="bgruening" name="hicexplorer_chicsignificantinteractions" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ff1af7bac1cb"/>
10 <repository owner="bgruening" name="hicexplorer_hicplotaverageregions" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9b383d429659"/> 10 <repository owner="bgruening" name="hicexplorer_hicbuildmatrixmicroc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0c22e9361298"/>
11 <repository owner="bgruening" name="hicexplorer_chicviewpointbackgroundmodel" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c354255ff705"/> 11 <repository owner="bgruening" name="hicexplorer_chicaggregatestatistic" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c3ffb2c1e314"/>
12 <repository owner="bgruening" name="hicexplorer_hicfindrestrictionsites" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f1b3902f8baf"/> 12 <repository owner="bgruening" name="hicexplorer_chicviewpoint" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="37125838e360"/>
13 <repository owner="bgruening" name="hicexplorer_hicinterintratad" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="32173084d53f"/> 13 <repository owner="bgruening" name="hicexplorer_hicpca" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f86ca478c6af"/>
14 <repository owner="bgruening" name="hicexplorer_hicplotmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f741330d4a71"/> 14 <repository owner="bgruening" name="hicexplorer_hicaverageregions" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="3240e8a7c54f"/>
15 <repository owner="bgruening" name="hicexplorer_hicpca" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1da5f169b491"/> 15 <repository owner="bgruening" name="hicexplorer_hiccompartmentspolarization" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="87eb9c58cd19"/>
16 <repository owner="bgruening" name="hicexplorer_chicqualitycontrol" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9ea228a9afc8"/> 16 <repository owner="bgruening" name="hicexplorer_hicbuildmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d9967770de96"/>
17 <repository owner="bgruening" name="hicexplorer_hiccompartmentspolarization" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a315574104c6"/> 17 <repository owner="bgruening" name="hicexplorer_hictransform" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="df64cc4dfb4d"/>
18 <repository owner="bgruening" name="hicexplorer_hicplotdistvscounts" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="06ced663d24f"/> 18 <repository owner="bgruening" name="hicexplorer_hicconvertformat" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="574f295b5ba4"/>
19 <repository owner="bgruening" name="hicexplorer_hichyperoptdetectloops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="bb8849fca57c"/> 19 <repository owner="bgruening" name="hicexplorer_hicplotsvl" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1602cc5b673c"/>
20 <repository owner="bgruening" name="hicexplorer_hicaverageregions" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="fe3aa71590d5"/> 20 <repository owner="bgruening" name="hicexplorer_hicplotdistvscounts" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="89cfe7de541b"/>
21 <repository owner="bgruening" name="hicexplorer_hiccorrectmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="30d7390bc918"/> 21 <repository owner="bgruening" name="hicexplorer_chicexportdata" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1a31e75e979e"/>
22 <repository owner="bgruening" name="hicexplorer_hicquickqc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5cbd7a902a8d"/> 22 <repository owner="bgruening" name="hicexplorer_hicplotviewpoint" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a10fce08c2dc"/>
23 <repository owner="bgruening" name="hicexplorer_hicmergematrixbins" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f72063d9426b"/> 23 <repository owner="bgruening" name="hicexplorer_hicquickqc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b13e7a200525"/>
24 <repository owner="bgruening" name="hicexplorer_hicdifferentialtad" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="07dd436ea686"/> 24 <repository owner="bgruening" name="hicexplorer_hicplotmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="025a128652dc"/>
25 <repository owner="bgruening" name="hicexplorer_chicexportdata" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="cab616fe7e64"/> 25 <repository owner="bgruening" name="hicexplorer_hicinterintratad" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="908fa330b93b"/>
26 <repository owner="bgruening" name="hicexplorer_hictransform" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1de2276f633f"/> 26 <repository owner="bgruening" name="hicexplorer_hiccomparematrices" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5dd1aae12f03"/>
27 <repository owner="bgruening" name="hicexplorer_hicmergedomains" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4b194e675916"/> 27 <repository owner="bgruening" name="hicexplorer_hicdetectloops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4375e25de06a"/>
28 <repository owner="bgruening" name="hicexplorer_chicviewpoint" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c4ed35f4f77f"/> 28 <repository owner="bgruening" name="hicexplorer_hicadjustmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e8760fc0e29b"/>
29 <repository owner="bgruening" name="hicexplorer_hicinfo" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b0f33533181d"/> 29 <repository owner="bgruening" name="hicexplorer_chicviewpointbackgroundmodel" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6f8debcf2ac9"/>
30 <repository owner="bgruening" name="hicexplorer_hicadjustmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="782bdcb775fb"/> 30 <repository owner="bgruening" name="hicexplorer_hiccorrectmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="937b7b9832d0"/>
31 <repository owner="bgruening" name="hicexplorer_chicaggregatestatistic" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="952abbc4b1de"/> 31 <repository owner="bgruening" name="hicexplorer_chicqualitycontrol" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f6a169b5e43b"/>
32 <repository owner="bgruening" name="hicexplorer_hiccomparematrices" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4f9305d3bb34"/> 32 <repository owner="bgruening" name="hicexplorer_hicmergematrixbins" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9d93c8fbe0a6"/>
33 <repository owner="bgruening" name="hicexplorer_hicplotsvl" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="beb5b5917d2f"/> 33 <repository owner="bgruening" name="hicexplorer_hicsummatrices" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d74cf4a61d65"/>
34 <repository owner="bgruening" name="hicexplorer_hicfindtads" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="11de0d28ab30"/> 34 <repository owner="bgruening" name="hicexplorer_hicplotaverageregions" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="3f1b286a5c34"/>
35 <repository owner="bgruening" name="hicexplorer_hicnormalize" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2aa5b6b65197"/> 35 <repository owner="bgruening" name="hicexplorer_hicmergeloops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1d9799f4b854"/>
36 <repository owner="bgruening" name="hicexplorer_chicsignificantinteractions" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f8320df1866b"/> 36 <repository owner="bgruening" name="hicexplorer_hiccorrelate" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0f5786ffa10d"/>
37 <repository owner="bgruening" name="hicexplorer_hicvalidatelocations" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="cef9fb4ece1c"/> 37 <repository owner="bgruening" name="hicexplorer_hicinfo" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7fbd6feba1ca"/>
38 <repository owner="bgruening" name="hicexplorer_hiccorrelate" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="cd40ca76865a"/> 38 <repository owner="bgruening" name="hicexplorer_hicfindtads" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="478aacfbaa37"/>
39 <repository owner="bgruening" name="hicexplorer_hicaggregatecontacts" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="63c8377c58b3"/> 39 <repository owner="bgruening" name="hicexplorer_chicplotviewpoint" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="920526260066"/>
40 <repository owner="bgruening" name="hicexplorer_hicsummatrices" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f81750434d70"/> 40 <repository owner="bgruening" name="hicexplorer_hicnormalize" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5e83c077e31d"/>
41 <repository owner="bgruening" name="hicexplorer_hicmergedomains" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="febfddb0b3e8"/>
41 </repositories> 42 </repositories>