Mercurial > repos > bgruening > suite_hicexplorer

changeset 28:429a6d917f50 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hicexplorer commit 07802a6bd441d9da888cfb8283f8c2135704f7c9
author bgruening
date Wed, 18 Oct 2023 18:35:32 +0000
parents 648b47e284a0
children
files repository_dependencies.xml
diffstat 1 files changed, 40 insertions(+), 36 deletions(-) [+]
line wrap: on
line diff
--- a/repository_dependencies.xml	Thu Jan 12 18:08:38 2023 +0000
+++ b/repository_dependencies.xml	Wed Oct 18 18:35:32 2023 +0000
@@ -1,39 +1,43 @@
 <?xml version="1.0" ?>
 <repositories description="HiCExplorer: Set of programs to process, analyze and visualize Hi-C data.">
-    <repository owner="bgruening" name="hicexplorer_hichyperoptdetectloops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="89fb1aab755b"/>
-    <repository owner="bgruening" name="hicexplorer_chicqualitycontrol" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="fadd03fbc4f5"/>
-    <repository owner="bgruening" name="hicexplorer_hicadjustmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="aeacaf08bd52"/>
-    <repository owner="bgruening" name="hicexplorer_hicfindrestrictionsites" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="aa829050d061"/>
-    <repository owner="bgruening" name="hicexplorer_hicplotaverageregions" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f490a6409f3d"/>
-    <repository owner="bgruening" name="hicexplorer_chicdifferentialtest" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9d878ac82c0f"/>
-    <repository owner="bgruening" name="hicexplorer_chicviewpoint" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="fdcf45efac66"/>
-    <repository owner="bgruening" name="hicexplorer_hicplotsvl" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="279fb179dae7"/>
-    <repository owner="bgruening" name="hicexplorer_hiccorrectmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f5a37c3906cc"/>
-    <repository owner="bgruening" name="hicexplorer_hicdetectloops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0d6c2ff54c76"/>
-    <repository owner="bgruening" name="hicexplorer_hicaverageregions" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b15d27c440fd"/>
-    <repository owner="bgruening" name="hicexplorer_hicaggregatecontacts" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e30485c5e93b"/>
-    <repository owner="bgruening" name="hicexplorer_chicviewpointbackgroundmodel" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b285586b61a6"/>
-    <repository owner="bgruening" name="hicexplorer_chicplotviewpoint" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="43c24d0bd463"/>
-    <repository owner="bgruening" name="hicexplorer_hicdifferentialtad" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="608538d083a2"/>
-    <repository owner="bgruening" name="hicexplorer_hicsummatrices" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2a57fc28ef3a"/>
-    <repository owner="bgruening" name="hicexplorer_chicsignificantinteractions" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6ef732512682"/>
-    <repository owner="bgruening" name="hicexplorer_hicfindtads" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5746d61f0a91"/>
-    <repository owner="bgruening" name="hicexplorer_hicvalidatelocations" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0ecdd41d707c"/>
-    <repository owner="bgruening" name="hicexplorer_chicaggregatestatistic" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1eae6fe69bbd"/>
-    <repository owner="bgruening" name="hicexplorer_hicnormalize" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="8ad23dfdaabb"/>
-    <repository owner="bgruening" name="hicexplorer_hiccomparematrices" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="826a6ac07f93"/>
-    <repository owner="bgruening" name="hicexplorer_hiccorrelate" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="bab2fa7355d9"/>
-    <repository owner="bgruening" name="hicexplorer_hicinfo" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="782e3ae92bc6"/>
-    <repository owner="bgruening" name="hicexplorer_hicbuildmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="29f66c353bcb"/>
-    <repository owner="bgruening" name="hicexplorer_hicmergedomains" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6f725a516914"/>
-    <repository owner="bgruening" name="hicexplorer_hicmergeloops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="420868438a99"/>
-    <repository owner="bgruening" name="hicexplorer_hiccompartmentspolarization" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="bd6e26c47853"/>
-    <repository owner="bgruening" name="hicexplorer_hictransform" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="21b3ef2a6a80"/>
-    <repository owner="bgruening" name="hicexplorer_hicquickqc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7679948176ef"/>
-    <repository owner="bgruening" name="hicexplorer_hicconvertformat" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2a24ce221cd7"/>
-    <repository owner="bgruening" name="hicexplorer_hicpca" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="41dbf4d162a2"/>
-    <repository owner="bgruening" name="hicexplorer_hicplotdistvscounts" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a4a413dcc59d"/>
-    <repository owner="bgruening" name="hicexplorer_hicplotviewpoint" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7cdc1a2de16e"/>
-    <repository owner="bgruening" name="hicexplorer_hicplotmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9939786dd9c9"/>
-    <repository owner="bgruening" name="hicexplorer_hicmergematrixbins" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4d511437b1e5"/>
+    <repository owner="bgruening" name="hicexplorer_hicnormalize" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6d042c96aceb"/>
+    <repository owner="bgruening" name="hicexplorer_hicmergedomains" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b376ef118807"/>
+    <repository owner="bgruening" name="hicexplorer_hicplotaverageregions" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ea5d67ec94ab"/>
+    <repository owner="bgruening" name="hicexplorer_hiccorrelate" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2b4d6a8dab36"/>
+    <repository owner="bgruening" name="hicexplorer_hicmergematrixbins" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="977dc15add20"/>
+    <repository owner="bgruening" name="hicexplorer_hicsummatrices" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="36dfa2825a59"/>
+    <repository owner="bgruening" name="hicexplorer_hicplotsvl" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b4e780e93c91"/>
+    <repository owner="bgruening" name="hicexplorer_hicbuildmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ed2cca6b5de4"/>
+    <repository owner="bgruening" name="hicexplorer_hictraintadclassifier" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1ff19476c5a5"/>
+    <repository owner="bgruening" name="hicexplorer_chicsignificantinteractions" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="640e0e45518a"/>
+    <repository owner="bgruening" name="hicexplorer_hichyperoptdetectloops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7f7c6ead2d0d"/>
+    <repository owner="bgruening" name="hicexplorer_hicaggregatecontacts" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f0216498a666"/>
+    <repository owner="bgruening" name="hicexplorer_hicplotviewpoint" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="58de3c7c8e89"/>
+    <repository owner="bgruening" name="hicexplorer_hicadjustmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2dccb6bb0add"/>
+    <repository owner="bgruening" name="hicexplorer_chicviewpointbackgroundmodel" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9d02f1819e81"/>
+    <repository owner="bgruening" name="hicexplorer_hiccomparematrices" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="3ee5332bf57c"/>
+    <repository owner="bgruening" name="hicexplorer_hicfindrestrictionsites" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6c5097f6d41e"/>
+    <repository owner="bgruening" name="hicexplorer_chicqualitycontrol" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b892fa1fcaec"/>
+    <repository owner="bgruening" name="hicexplorer_hiccorrectmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ea19190ce5e0"/>
+    <repository owner="bgruening" name="hicexplorer_hicvalidatelocations" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1d201e8378b3"/>
+    <repository owner="bgruening" name="hicexplorer_hicquickqc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="21d859ad4502"/>
+    <repository owner="bgruening" name="hicexplorer_hicinfo" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="e4f8fceab96a"/>
+    <repository owner="bgruening" name="hicexplorer_chicaggregatestatistic" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="01c37e54e86e"/>
+    <repository owner="bgruening" name="hicexplorer_chicplotviewpoint" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="013e53ccc7ac"/>
+    <repository owner="bgruening" name="hicexplorer_chicdifferentialtest" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="9d42a6133690"/>
+    <repository owner="bgruening" name="hicexplorer_hicinterintratad" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="55b013e59018"/>
+    <repository owner="bgruening" name="hicexplorer_hicdifferentialtad" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="77d8e0fd162a"/>
+    <repository owner="bgruening" name="hicexplorer_hicfindtads" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ec4b948dc6f0"/>
+    <repository owner="bgruening" name="hicexplorer_chicexportdata" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="23b8d6b8960c"/>
+    <repository owner="bgruening" name="hicexplorer_hictransform" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f36828ebdc54"/>
+    <repository owner="bgruening" name="hicexplorer_hicpca" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="77919cc3618e"/>
+    <repository owner="bgruening" name="hicexplorer_hicdetectloops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="0410b6aada45"/>
+    <repository owner="bgruening" name="hicexplorer_chicviewpoint" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f881c94fb3b3"/>
+    <repository owner="bgruening" name="hicexplorer_hicmergeloops" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1511a8ebe906"/>
+    <repository owner="bgruening" name="hicexplorer_hiccompartmentspolarization" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="3a6a5381db36"/>
+    <repository owner="bgruening" name="hicexplorer_hicplotdistvscounts" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="6326cd29c1c3"/>
+    <repository owner="bgruening" name="hicexplorer_hicaverageregions" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c72fa6cb8817"/>
+    <repository owner="bgruening" name="hicexplorer_hicconvertformat" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c0737631eea1"/>
+    <repository owner="bgruening" name="hicexplorer_hicplotmatrix" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="b63363075c2e"/>
+    <repository owner="bgruening" name="hicexplorer_hictadclassifier" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="887d203233e5"/>
 </repositories>
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