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view tapscan_rules_v81.txt @ 0:196795831b6a draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/tapscan commit 2e1cd301fb38af8a1e9267fc60fcb5ca3c576aeb
author bgruening
date Wed, 14 Feb 2024 13:54:16 +0000
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ABI3/VP1;AP2;should not
ABI3/VP1;Auxin_resp;should not
ABI3/VP1;B3;should
ABI3/VP1;WRKY;should not
Alfin-like;Alfin-like;should
Alfin-like;Homeobox;should not
Alfin-like;zf-TAZ;should not
Alfin-like;PHD;should not
AP2;AP2;should
AP2;CRF;should not
ARF;Auxin_resp;should
Argonaute;Piwi;should
Argonaute;PAZ;should
ARID;ARID;should
Aux/IAA;AUX_IAA;should
Aux/IAA;Auxin_resp;should not
Aux/IAA;B3;should not
BBR/BPC;GAGA_bind;should
BES1;BES1_N;should
bHLH;HLH;should
bHLH;TCP;should not
bHLH_TCP;TCP;should
bHSH;TF_AP-2;should
BSD domain containing;BSD;should
bZIP1;bZIP_1;should
bZIP1;HLH;should not
bZIP1;Homeobox;should not
bZIP2;bZIP_2;should
bZIP2;HLH;should not
bZIP2;Homeobox;should not
bZIPAUREO;bZIP_AUREO;should
bZIPAUREO;HLH;should not
bZIPAUREO;Homeobox;should not
bZIPCDD;bZIP_CDD;should
bZIPCDD;HLH;should not
bZIPCDD;Homeobox;should not
C2C2_CO-like;CCT;should
C2C2_CO-like;GATA;should not
C2C2_CO-like;tify;should not
C2C2_CO-like;PLATZ;should not
C2C2_CO-like;zf-B_box;should
C2C2_Dof;zf-Dof;should
C2C2_Dof;GATA;should not
C2C2_GATA;GATA;should
C2C2_GATA;tify;should not
C2C2_GATA;zf-Dof;should not
C2C2_YABBY;YABBY;should
C2H2;zf-C2H2;should
C2H2;zf-MIZ;should not
C3H;AP2;should not
C3H;SRF-TF;should not
C3H;MYB-2R;should not
C3H;MYB-3R;should not
C3H;MYB-4R;should not
C3H;zf-C2H2;should not
C3H;zf-CCCH;should
CAMTA;CG-1;should
CAMTA;IQ;should
NF-YA;bZIP_1;should not
NF-YA;bZIP_2;should not
NF-YA;CBFB_NFYA;should
NF-YB;NF-YB;should
NF-YB;NF-YC;should not
NF-YC;NF-YB;should not
NF-YC;NF-YC;should
NF-YC;HMG_box;should not
Coactivator p15;PC4;should
CPP;TCR;should
CSD;CSD;should
CudA;STAT_bind;should
CudA;SH2;should
DBP;DNC;should
DBP;PP2C;should
DDT;DDT;should
DDT;Homeobox;should not
DDT;Alfin-like;should not
Dicer;Piwi;should not
Dicer;DEAD;should
Dicer;Helicase_C;should
Dicer;Ribonuclease_3;should
Dicer;dsrm;should
DUF246 domain containing/O-FucT;O-FucT;should
DUF296 domain containing;DUF296;should
DUF547 domain containing;DUF547;should
DUF632 domain containing;DUF632;should
DUF833 domain containing/TANGO2;TANGO2;should
E2F/DP;E2F_TDP;should
EIL;EIN3;should
FHA;FHA;should
GARP_ARR-B_G2;CCT;should not
GARP_ARR-B_G2;G2-like_Domain;should
GARP_ARR-B_G2;Response_reg;should
GARP_ARR-B_Myb;CCT;should not
GARP_ARR-B_Myb;Response_reg;should
GARP_ARR-B_Myb;Myb_DNA-binding;should
GARP_G2-like;G2-like_Domain;should
GARP_G2-like;Response_reg;should not
GARP_G2-like;Myb_DNA-binding;should not
GeBP;DUF573;should
GIF;SSXT;should
GNAT;Acetyltransf_1;should
GNAT;PHD;should not
GRAS;GRAS;should
GRF;QLQ;should
GRF;WRC;should
C3HDZ;Homeobox;should
C3HDZ;START;should
C3HDZ;MEKHLA;should
C4HDZ;Homeobox;should
C4HDZ;START;should
C4HDZ;MEKHLA;should not
HD_PLINC;ZF-HD_dimer;should
HD_WOX;WOX_HD;should
HD_DDT;Homeobox;should
HD_DDT;DDT;should
HD_DDT;WHIM1;should
HD_DDT;WSD;should
HD_PHD;PHD;should
HD_PHD;Homeobox;should
HD_PINTOX;Homeobox;should
HD_PINTOX;PINTOX;should
HD_BEL;Homeobox;should
HD_BEL;BEL;should
HD_KNOX1;Homeobox;should
HD_KNOX1;KNOX1;should
HD_KNOX1;KNOX2;should
HD_KNOX1;KNOXC;should not
HD_KNOX2;Homeobox;should
HD_KNOX2;KNOX1;should
HD_KNOX2;KNOX2;should
HD_KNOX2;KNOXC;should
HD-other;EIN3;should not
HD-other;Homeobox;should
HD-other;bZIP_1;should not
HD-other;WOX_HD;should not
HD-other;PINTOX;should not
HD-other;PHD;should not
HD-other;BEL;should not
HMG;ARID;should not
HMG;HMG_box;should
HMG;YABBY;should not
HRT;HRT;should
HSF;HSF_DNA-bind;should
IWS1;Med26;should
Jumonji_PKDM7;JmjC;should
Jumonji_PKDM7;JmjN;should
Jumonji_PKDM7;zf-C5HC2;should
Jumonji_PKDM7;FYRN;should
Jumonji_PKDM7;FYRC;should
Jumonji_Other;JmjC;should
LFY;FLO_LFY;should
LIM;two_or_more_LIM;should
LUG;LUFS_Domain;should
MADS;SRF-TF;should
MADS;K-box;should not
MADS_MIKC;SRF-TF;should
MADS_MIKC;K-box;should
MBF1;MBF1;should
Med6;Med6;should
Med7;Med7;should
mTERF;mTERF;should
MYB-2R;G2-like_Domain;should not
MYB-2R;Response_reg;should not
MYB-2R;trihelix;should not
MYB-2R;MYB-2R;should
MYB-3R;G2-like_Domain;should not
MYB-3R;Response_reg;should not
MYB-3R;trihelix;should not
MYB-3R;MYB-3R;should
MYB-4R;G2-like_Domain;should not
MYB-4R;Response_reg;should not
MYB-4R;trihelix;should not
MYB-4R;MYB-4R;should
MYB-related;ARID;should not
MYB-related;G2-like_Domain;should not
MYB-related;Myb_DNA-binding;should
MYB-related;Response_reg;should not
MYB-related;trihelix;should not
MYB-related;MYB-2R;should not
MYB-related;MYB-3R;should not
MYB-related;MYB-4R;should not
NAC;NAM;should
NZZ;NOZZLE;should
OFP;Ovate;should
PcG_EZ;CXC;should
PcG_EZ;SET;should
PcG_FIE;FIE_clipped_for_HMM;should
PcG_FIE;WD40;should
PcG_VEFS;VEFS-Box;should
PcG_VEFS;zf-C2H2;should not
PcG_MSI;WD40;should
PcG_MSI;CAF1C_H4-bd;should
PcG_MSI;FIE_clipped_for_HMM;should not
PHD;Myb_DNA-binding;should not
PHD;Alfin-like;should not
PHD;ARID;should not
PHD;DDT;should not
PHD;Homeobox;should not
PHD;JmjC;should not
PHD;JmjN;should not
PHD;PHD;should
PHD;SWIB;should not
PHD;zf-TAZ;should not
PHD;zf-MIZ;should not
PHD;zf-CCCH;should not
PHD;HMG_box;should not
PLATZ;PLATZ;should
Pseudo ARR-B;CCT;should
Pseudo ARR-B;Response_reg;should
Pseudo ARR-B;tify;should not
RB;RB_B;should
Rcd1-like;Rcd1;should
Rel;RHD_DNA_bind;should
RF-X;RFX_DNA_binding;should
RRN3;RRN3;should
Runt;Runt;should
S1Fa-like;S1FA;should
SAP;STER_AP;should
SBP;SBP;should
SET;zf-C2H2;should not
SET;TCR;should not
SET;CXC;should not
SET;PHD;should not
SET;Myb_DNA-binding;should not
SET;SET;should
Sigma70-like;Sigma70_r2;should
Sigma70-like;Sigma70_r3;should
Sigma70-like;Sigma70_r4;should
Sin3;PAH;should
Sin3;WRKY;should not
Sir2;SIR2;should
SOH1;Med31;should
SRS;DUF702;should
SWI/SNF_BAF60b;SWIB;should
SWI/SNF_SNF2;AP2;should not
SWI/SNF_SNF2;PHD;should not
SWI/SNF_SNF2;SNF2_N;should
SWI/SNF_SNF2;zf-CCCH;should not
SWI/SNF_SNF2;Myb_DNA-binding;should not
SWI/SNF_SNF2;HMG_box;should not
SWI/SNF_SWI3;SWIRM;should
SWI/SNF_SWI3;Myb_DNA-binding;should
TEA;TEA;should
TFb2;Tfb2;should
tify;tify;should
TRAF;BTB;should
TRAF;zf-TAZ;should not
Trihelix;trihelix;should
TUB;Tub;should
ULT;ULT_Domain;should
VARL;VARL;should
VOZ;VOZ_Domain;should
Whirly;Whirly;should
WRKY;WRKY;should
Zinc finger, AN1 and A20 type;zf-AN1;should
Zinc finger, AN1 and A20 type;zf-C2H2;should not
Zinc finger, MIZ type;zf-MIZ;should
Zinc finger, MIZ type;zf-C2H2;should not
Zinc finger, ZPR1;zf-ZPR1;should
Zn_clus;Zn_clus;should
ALOG;ALOG;should
C2H2;C2H2-IDD;should not
C2H2_IDD;C2H2-IDD;should
C2H2_IDD;zf-C2H2;should
MYST;zf-MYST;should
CBP;CBP;should
CBP;zf-TAZ;should
CBP;BTB;should not
TAFII250;DUF3591;should
LOB1;bZIP_1;should not
LOB1;bZIP_2;should not
LOB1;DUF260;should
LOB1;HLH;should not
LOB1;Homeobox;should not
LOB2;LOB2;should
LDL/FLD;SWIRM;should
LDL/FLD;Myb_DNA-binding;should not
ADA2;zz-ADA2;should
ADA2;Myb_DNA-binding;should
RKD;RWP-RK;should
RKD;NLP;should not
NLP;RWP-RK;should
NLP;NLP;should
CRF;CRF;should
CRF;AP2;should
GIY_YIG;GIY_YIG;should
ZPR;ZPR;should
HD-LD;LD;should
HD-NDX;NDX;should
HD-SAWADEE;SAWADEE;should
C1HDZ;C1HDZ;should
C1HDZ;Homeobox;should
C1HDZ;START;should not
C1HDZ;MEKHLA;should not
C2HDZ;C2HDZ;should
C2HDZ;Homeobox;should
C2HDZ;START;should not
C2HDZ;MEKHLA;should not