Mercurial > repos > bgruening > tapscan
view test-data/output.domtbl.tsv @ 0:196795831b6a draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/tapscan commit 2e1cd301fb38af8a1e9267fc60fcb5ca3c576aeb
| author | bgruening |
|---|---|
| date | Wed, 14 Feb 2024 13:54:16 +0000 |
| parents | |
| children | c4f865bd101a |
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# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Ec-01_005970.1 - 608 Acetyltransf_1 PF00583.26 117 1.6e-14 44.3 0.0 1 1 1.8e-15 2.8e-14 43.5 0.0 31 117 348 434 305 434 0.66 Acetyltransferase (GNAT) domain protein (608) ;mRNA; f:5180258-5197307 Ec-00_001160.1 - 809 FHA PF00498.27 69 2.3e-19 59.7 0.2 1 1 2.4e-20 3.8e-19 59.0 0.2 2 69 123 190 122 190 0.96 Forkhead-associated (FHA) domain (809) ;mRNA; f:1452084-1459465 Ec-01_004960.2 - 797 K-box PF01486.18 93 3.1e-06 17.5 4.8 1 1 3.7e-07 6e-06 16.6 4.8 11 85 683 754 674 756 0.81 Ankyrin repeat-containing domain (797) ;mRNA; f:4270310-4278760 Ec-00_010160.1 - 978 Response_reg PF00072.25 112 1.2e-10 31.7 0.0 1 1 1.6e-11 2.6e-10 30.7 0.0 13 106 845 952 840 958 0.74 Phytochrome-like protein (978) ;mRNA; f:17223525-17226527 Ec-00_001700.1 - 579 RWP-RK PF02042.16 49 2.1e-19 59.5 0.1 1 1 2.3e-20 3.7e-19 58.7 0.1 7 46 111 150 106 153 0.95 NIN-like transcription factor (579) ;mRNA; r:1923852-1928158 Ec-00_001310.1 - 668 SET PF00856.29 169 4.1e-18 56.4 0.0 1 1 1.2e-18 2e-17 54.2 0.0 1 168 83 338 83 339 0.72 SET domain protein (668) ;mRNA; r:1563326-1571582 Ec-00_001730.1 - 1089 WD40 PF00400.33 38 1.9e-38 120.1 18.0 1 4 3.9e-09 3.1e-08 24.5 0.2 5 38 579 611 575 611 0.86 WD40 repeat (1089) ;mRNA; r:1948051-1960039 Ec-00_001730.1 - 1089 WD40 PF00400.33 38 1.9e-38 120.1 18.0 2 4 1e-11 8.1e-11 32.7 0.3 3 38 662 698 660 698 0.93 WD40 repeat (1089) ;mRNA; r:1948051-1960039 Ec-00_001730.1 - 1089 WD40 PF00400.33 38 1.9e-38 120.1 18.0 3 4 9.6e-11 7.7e-10 29.6 0.1 8 38 716 747 709 747 0.88 WD40 repeat (1089) ;mRNA; r:1948051-1960039 Ec-00_001730.1 - 1089 WD40 PF00400.33 38 1.9e-38 120.1 18.0 4 4 1.4e-05 0.00011 13.3 0.0 4 38 754 789 751 789 0.90 WD40 repeat (1089) ;mRNA; r:1948051-1960039 Ec-01_005390.1 - 407 WD40 PF00400.33 38 3.8e-17 52.7 3.9 1 2 7.3e-06 5.8e-05 14.1 0.0 17 37 88 108 72 109 0.77 WD40 repeat (407) ;mRNA; f:4621750-4629304 Ec-01_005390.1 - 407 WD40 PF00400.33 38 3.8e-17 52.7 3.9 2 2 1.8e-07 1.4e-06 19.2 0.1 8 38 223 255 217 255 0.89 WD40 repeat (407) ;mRNA; f:4621750-4629304 Ec-00_001360.1 - 442 bZIP_2 - 55 9.2e-17 51.1 12.5 1 1 1e-17 1.6e-16 50.3 12.5 2 49 183 230 182 233 0.92 aureochrome 2 (442) ;mRNA; r:1593684-1598236 Ec-00_001360.1 - 442 bZIP_CDD - 52 4.1e-13 39.4 7.8 1 1 4.4e-14 7.1e-13 38.6 7.8 2 43 188 229 187 232 0.94 aureochrome 2 (442) ;mRNA; r:1593684-1598236 Ec-00_001360.1 - 442 bZIP_AUREO - 52 2.2e-22 69.4 6.2 1 1 2.7e-23 4.4e-22 68.5 6.2 1 51 187 237 187 238 0.97 aureochrome 2 (442) ;mRNA; r:1593684-1598236 # # Program: hmmsearch # Version: 3.3.2 (Nov 2020) # Pipeline mode: SEARCH # Query file: /home/saskia/code/github/galaxyproject/tools-iuc/tools/tapscan/tapscan_domains_v12.txt # Target file: /tmp/saskia/tmp4n93kzh1/files/b/7/b/dataset_b7b39fd6-41f1-440d-bfb7-da7a3a9f070e.dat # Option settings: hmmsearch --domtblout domtblout.txt --cut_ga /home/saskia/code/github/galaxyproject/tools-iuc/tools/tapscan/tapscan_domains_v12.txt /tmp/saskia/tmp4n93kzh1/files/b/7/b/dataset_b7b39fd6-41f1-440d-bfb7-da7a3a9f070e.dat # Current dir: /tmp/saskia/tmp4n93kzh1/job_working_directory/000/4/working # Date: Mon Nov 13 14:57:28 2023 # [ok]