annotate head.xml @ 21:86755160afbf draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit c2b1677d1c94433f777c2dc28ac8eec0a99cc6a7
author bgruening
date Fri, 16 Aug 2024 10:41:54 +0000
parents 12615d397df7
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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12615d397df7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 70980e329cd9fa78e74bf14a76fd4ded9bd2b91f
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1 <tool id="tp_head_tool" name="Select first" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
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2 <description>lines from a dataset (head)</description>
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3 <macros>
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4 <import>macros.xml</import>
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5 </macros>
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12615d397df7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 70980e329cd9fa78e74bf14a76fd4ded9bd2b91f
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6 <expand macro="creator"/>
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7 <expand macro="requirements" />
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8 <version_command>head --version | head -n 1</version_command>
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9 <command>
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10 <![CDATA[
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11 head
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12 --lines
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13 $complement$count
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14 '${infile}'
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15 > '${outfile}'
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16 ]]>
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17 </command>
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18 <inputs>
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19 <param name="infile" type="data" format="txt" label="File to select" />
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20 <param name="complement" type="select" label="Operation">
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21 <option value="">Keep first lines</option>
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22 <option value="-">Remove last lines</option>
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23 </param>
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37e1eb05b1b4 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty
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24 <param name="count" type="integer" value="10"
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25 label="Number of lines" help="These will be kept/discarded depending on 'operation'. (--lines)" />
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26 </inputs>
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27 <outputs>
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28 <data name="outfile" format_source="infile" metadata_source="infile"/>
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29 </outputs>
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30 <tests>
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31 <test>
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32 <param name="count" value="10"/>
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33 <param name="infile" value="1.bed"/>
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34 <output name="outfile" file="head_results1.bed"/>
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35 </test>
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36 </tests>
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37 <help>
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38 <![CDATA[
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39 **What it does**
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40
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41 This tool outputs specified number of lines from the **beginning** of a dataset
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42
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43 -----
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44
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45 **Example**
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46
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47 Selecting 2 lines from this::
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49 chr7 56632 56652 D17003_CTCF_R6 310 +
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50 chr7 56736 56756 D17003_CTCF_R7 354 +
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51 chr7 56761 56781 D17003_CTCF_R4 220 +
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52 chr7 56772 56792 D17003_CTCF_R7 372 +
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53 chr7 56775 56795 D17003_CTCF_R4 207 +
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54
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55 will produce::
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56
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57 chr7 56632 56652 D17003_CTCF_R6 310 +
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58 chr7 56736 56756 D17003_CTCF_R7 354 +
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59
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60 ]]>
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61 </help>
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62 <expand macro="citations" />
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63 </tool>