Mercurial > repos > bgruening > text_processing
annotate tac.xml @ 20:fbf99087e067 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit c4f50d1ee81c1618344ede1f04a46a28d8068bcc
author | bgruening |
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date | Thu, 28 Mar 2024 13:20:16 +0000 |
parents | 12615d397df7 |
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12615d397df7
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 70980e329cd9fa78e74bf14a76fd4ded9bd2b91f
bgruening
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8
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1 <tool id="tp_tac" name="tac" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> |
0 | 2 <description>reverse a file (reverse cat)</description> |
3 <macros> | |
4 <import>macros.xml</import> | |
5 </macros> | |
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12615d397df7
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 70980e329cd9fa78e74bf14a76fd4ded9bd2b91f
bgruening
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8
diff
changeset
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6 <expand macro="creator"/> |
0 | 7 <expand macro="requirements" /> |
8 <version_command>tac --version | head -n 1</version_command> | |
9 <command> | |
10 <![CDATA[ | |
11 tac | |
12 #if str($separator.separator_select) == "yes": | |
13 $separator.before | |
14 $separator.regex | |
15 #if $separator.separator_string: | |
16 "$separator.separator_string" | |
17 #end if | |
18 #end if | |
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12615d397df7
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 70980e329cd9fa78e74bf14a76fd4ded9bd2b91f
bgruening
parents:
8
diff
changeset
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19 '$infile' |
12615d397df7
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 70980e329cd9fa78e74bf14a76fd4ded9bd2b91f
bgruening
parents:
8
diff
changeset
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20 > '$outfile' |
0 | 21 ]]> |
22 </command> | |
23 <inputs> | |
24 <param name="infile" type="data" format="txt" label="Input file"/> | |
25 <conditional name="separator"> | |
26 <param name="separator_select" type="select" label="Do you want to use a separator other than newline?"> | |
27 <option value="no">No</option> | |
28 <option value="yes">Yes</option> | |
29 </param> | |
30 <when value="no" /> | |
31 <when value="yes"> | |
32 <param name="before" type="boolean" truevalue="-b" falsevalue="" checked="True" | |
33 label="Attach the separator before instead of after" help="(--before)"/> | |
34 <param name="regex" type="boolean" truevalue="-r" falsevalue="" checked="True" | |
35 label="Interpret the separator as a regular expression" help="(--regex)"/> | |
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37e1eb05b1b4
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty
bgruening
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0
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36 <param name="separator_string" type="text" value="" |
0 | 37 label="Separator to use" help="(--separator)" /> |
38 </when> | |
39 </conditional> | |
40 </inputs> | |
41 <outputs> | |
42 <data name="outfile" format_source="infile" metadata_source="infile"/> | |
43 </outputs> | |
44 <tests> | |
45 <test> | |
46 <param name="infile" value="1.bed"/> | |
47 <output name="outfile" file="tac_result1.txt"/> | |
48 </test> | |
49 <test> | |
50 <param name="infile" value="1.bed"/> | |
51 <param name="separator_select" value="yes"/> | |
52 <param name="before" value="True"/> | |
53 <output name="outfile" file="tac_result2.txt"/> | |
54 </test> | |
55 </tests> | |
56 <help> | |
57 <![CDATA[ | |
58 **What it does** | |
59 | |
60 tac is a Linux command that allows you to see a file line-by-line backwards. It is named by analogy with cat. | |
61 | |
62 Mandatory arguments to long options are mandatory for short options too: | |
63 | |
64 -b, --before attach the separator before instead of after | |
65 -r, --regex interpret the separator as a regular expression | |
66 -s, --separator=STRING use STRING as the separator instead of newline | |
67 | |
68 ----- | |
69 | |
70 **Example** | |
71 | |
72 Input file: | |
73 | |
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4c752559b236
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 3103ebed1a420c7d3415b67ef532ea579edf9faa
bgruening
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diff
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74 0 1 2 3 4 5 # 6 7 8 9 |
0 | 75 |
76 | |
77 default settings: | |
78 | |
8
4c752559b236
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 3103ebed1a420c7d3415b67ef532ea579edf9faa
bgruening
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6
diff
changeset
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79 9 8 7 6 # 5 4 3 2 1 0 |
0 | 80 |
81 with option -s 5: | |
8
4c752559b236
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 3103ebed1a420c7d3415b67ef532ea579edf9faa
bgruening
parents:
6
diff
changeset
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82 |
4c752559b236
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 3103ebed1a420c7d3415b67ef532ea579edf9faa
bgruening
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6
diff
changeset
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83 # 6 7 8 9 0 1 2 3 4 5 |
0 | 84 |
85 with option -b and -s 5: | |
86 | |
8
4c752559b236
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 3103ebed1a420c7d3415b67ef532ea579edf9faa
bgruening
parents:
6
diff
changeset
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87 5 # 6 7 8 9 0 1 2 3 4 |
0 | 88 |
89 ]]> | |
90 </help> | |
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60edf2f8c28f
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit b'e6ee273f75fff61d1e419283fa8088528cf59470\n'
bgruening
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3
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changeset
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91 <expand macro="citations" /> |
0 | 92 </tool> |