Mercurial > repos > bgruening > text_processing
annotate tail.xml @ 21:86755160afbf draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit c2b1677d1c94433f777c2dc28ac8eec0a99cc6a7
author | bgruening |
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date | Fri, 16 Aug 2024 10:41:54 +0000 |
parents | 12615d397df7 |
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12615d397df7
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 70980e329cd9fa78e74bf14a76fd4ded9bd2b91f
bgruening
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6
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1 <tool id="tp_tail_tool" name="Select last" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> |
0 | 2 <description>lines from a dataset (tail)</description> |
3 <macros> | |
4 <import>macros.xml</import> | |
5 </macros> | |
19
12615d397df7
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 70980e329cd9fa78e74bf14a76fd4ded9bd2b91f
bgruening
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6
diff
changeset
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6 <expand macro="creator"/> |
0 | 7 <expand macro="requirements" /> |
8 <version_command>tail --version | head -n 1</version_command> | |
9 <command> | |
10 <![CDATA[ | |
11 tail | |
12 --lines $complement$num_lines | |
13 '$infile' | |
14 > '$outfile' | |
15 ]]> | |
16 </command> | |
17 <inputs> | |
18 <param name="infile" format="txt" type="data" label="Text file" /> | |
19 <param name="complement" type="select" label="Operation"> | |
20 <option value="">Keep last lines</option> | |
21 <option value="+">Keep everything from this line on</option> | |
22 </param> | |
3
37e1eb05b1b4
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty
bgruening
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0
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changeset
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23 <param name="num_lines" type="integer" value="10" |
0 | 24 label="Number of lines" help="These will be kept (depending on 'operation'). (--lines)" /> |
25 </inputs> | |
26 <outputs> | |
27 <data name="outfile" format_source="infile" metadata_source="infile" /> | |
28 </outputs> | |
29 <tests> | |
30 <test> | |
31 <param name="infile" value="1.bed"/> | |
32 <param name="num_lines" value="10"/> | |
33 <output name="outfile" file="tail_results1.bed"/> | |
34 </test> | |
35 <test> | |
36 <param name="infile" value="1.bed"/> | |
37 <param name="num_lines" value="10"/> | |
38 <param name="complement" value="+"/> | |
39 <output name="outfile" file="tail_results2.bed"/> | |
40 </test> | |
41 </tests> | |
42 <help> | |
43 <![CDATA[ | |
44 **What it does** | |
45 | |
46 This tool outputs specified number of lines from the **end** of a dataset | |
47 | |
48 ----- | |
49 | |
50 **Example** | |
51 | |
52 - Input File:: | |
53 | |
54 chr7 57134 57154 D17003_CTCF_R7 356 - | |
55 chr7 57247 57267 D17003_CTCF_R4 207 + | |
56 chr7 57314 57334 D17003_CTCF_R5 269 + | |
57 chr7 57341 57361 D17003_CTCF_R7 375 + | |
58 chr7 57457 57477 D17003_CTCF_R3 188 + | |
59 | |
60 - Show last two lines of above file. The result is:: | |
61 | |
62 chr7 57341 57361 D17003_CTCF_R7 375 + | |
63 chr7 57457 57477 D17003_CTCF_R3 188 + | |
64 | |
65 ]]> | |
66 </help> | |
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60edf2f8c28f
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit b'e6ee273f75fff61d1e419283fa8088528cf59470\n'
bgruening
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3
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changeset
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67 <expand macro="citations" /> |
0 | 68 </tool> |