comparison awk.xml @ 19:12615d397df7 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 70980e329cd9fa78e74bf14a76fd4ded9bd2b91f

18:d698c222f354

<tool id="tp_awk_tool" name="Text reformatting" version="@BASE_VERSION@.2">
    <description>with awk</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <requirements>
        <requirement type="package" version="4.2.0">gawk</requirement>
    </requirements>
    <version_command>awk --version | head -n 1</version_command>
    <command>
<![CDATA[
        env -i
        \$(which awk)
            --sandbox
            -v FS='	'
            -v OFS='	'
            --re-interval
            -f "$awk_script"
            "$infile"
        > "$outfile"
]]>
    </command>
    <configfiles>
        <configfile name="awk_script">$code</configfile>
    </configfiles>

  - matches the beginning of a line or string.
  - indicates negation in a character class. For example, [^...] matches every character except the ones inside brackets.
- **$** matches the end of a line or string.
- **\|** Separates alternate possibilities.

@REFERENCES@
]]>
  </help>
  <expand macro="citations" />
</tool>

19:12615d397df7

<tool id="tp_awk_tool" name="Text reformatting" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
    <description>with awk</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="creator"/>
    <requirements>
        <requirement type="package" version="5.3.0">gawk</requirement>
    </requirements>
    <version_command>awk --version | head -n 1</version_command>
    <command>
<![CDATA[
        env -i
        \$(which awk)
            --sandbox
            -v FS='	'
            -v OFS='	'
            --re-interval
            -f '$awk_script'
            '$infile'
        > '$outfile'
]]>
    </command>
    <configfiles>
        <configfile name="awk_script">$code</configfile>
    </configfiles>

  - matches the beginning of a line or string.
  - indicates negation in a character class. For example, [^...] matches every character except the ones inside brackets.
- **$** matches the end of a line or string.
- **\|** Separates alternate possibilities.

]]>
  </help>
  <expand macro="citations" />
</tool>