comparison recurring_lines.xml @ 19:12615d397df7 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 70980e329cd9fa78e74bf14a76fd4ded9bd2b91f

18:d698c222f354

<tool id="tp_text_file_with_recurring_lines" name="Create text file" version="@BASE_VERSION@.0">
    <description>with recurring lines</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <version_command>yes --version | head -n 1</version_command>
    <command>
<![CDATA[
        #for $token in $token_set:
            #if str($token.repeat_select.repeat_select_opts) == 'user':
                times=#echo $token.repeat_select.times#;
            #else:
                times=`wc -l $token.repeat_select.infile | awk '{print $1}'`;
            #end if
            yes -- "${token.line}" 2>/dev/null | head -n \$times >> $outfile;
        #end for
]]>
    </command>
    <inputs>
        <repeat name="token_set" title=" selection" min="1">

This tool creates a text file with recurring lines. You can specify a bunch of characters or entire sentences.
The entire string will be printed X times separated by a line break. X can be either given by the use as a number or calculated by a given file.
In case the user provides a file, the line number will be used as X.

@REFERENCES@
]]>
    </help>
    <expand macro="citations" />
</tool>

19:12615d397df7

<tool id="tp_text_file_with_recurring_lines" name="Create text file" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
    <description>with recurring lines</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="creator"/>
    <expand macro="requirements" />
    <version_command>yes --version | head -n 1</version_command>
    <command>
<![CDATA[
        #for $token in $token_set:
            #if str($token.repeat_select.repeat_select_opts) == 'user':
                times=#echo $token.repeat_select.times#;
            #else:
                times=`wc -l $token.repeat_select.infile | awk '{print $1}'`;
            #end if
            yes -- '${token.line}' 2>/dev/null | head -n \$times >> '$outfile';
        #end for
]]>
    </command>
    <inputs>
        <repeat name="token_set" title=" selection" min="1">

This tool creates a text file with recurring lines. You can specify a bunch of characters or entire sentences.
The entire string will be printed X times separated by a line break. X can be either given by the use as a number or calculated by a given file.
In case the user provides a file, the line number will be used as X.

]]>
    </help>
    <expand macro="citations" />
</tool>