comparison grep.xml @ 5:20344ce0c811 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit b9d202134c3c6d0e5c398c3ae75e410067fcfc52

4:288462ec2630

<tool id="tp_grep_tool" name="Search in textfiles" version="@BASE_VERSION@.0">
    <description>(grep)</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements">
        <requirement type="package" version="2.14">gnu_grep</requirement>
    </expand>
    <version_command>grep --version | head -n 1</version_command>
    <command>
<![CDATA[
        #if str($color) == "COLOR":
            GREP_COLOR='1;34'

                $invert
                $case_sensitive
                 -- "${url_paste}"
                '${infile}' | grep -v "^--$" > "${output}"
        #end if

        ##grep_wrapper.sh '$infile' '$output' '$url_paste' $color -A $lines_after -B $lines_before $invert $case_sensitive
]]>
    </command>
    <inputs>
        <param name="infile" format="txt" type="data" label="Select lines from" />

            <param name="invert" value="" />
            <param name="url_paste" value="[^ ]+" />
            <param name="lines_before" value="0" />
            <param name="lines_after" value="0" />
            <param name="color" value="NOCOLOR" />
            <output name="output" file="egrep_results2.txt" />>
        </test>
    </tests>
    <help>
<![CDATA[
**What it does**

5:20344ce0c811

<tool id="tp_grep_tool" name="Search in textfiles" version="@BASE_VERSION@.0">
    <description>(grep)</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <requirements>
        <requirement type="package" version="2.14">grep</requirement>
        <requirement type="package" version="4.2.3.dev0">sed</requirement><!-- for ansi2html.sh -->
    </requirements>
    <version_command>grep --version | head -n 1</version_command>
    <command>
<![CDATA[
        #if str($color) == "COLOR":
            GREP_COLOR='1;34'

                $invert
                $case_sensitive
                 -- "${url_paste}"
                '${infile}' | grep -v "^--$" > "${output}"
        #end if
]]>
    </command>
    <inputs>
        <param name="infile" format="txt" type="data" label="Select lines from" />

            <param name="invert" value="" />
            <param name="url_paste" value="[^ ]+" />
            <param name="lines_before" value="0" />
            <param name="lines_after" value="0" />
            <param name="color" value="NOCOLOR" />
            <output name="output" file="egrep_results2.txt" />
        </test>
    </tests>
    <help>
<![CDATA[
**What it does**