Mercurial > repos > bgruening > text_processing
comparison replace_text_in_column.xml @ 22:3dc70b59608c draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 2dc2df988bd2dde9f8d7f629b594186dbd4fdc2b
| author | bgruening |
|---|---|
| date | Fri, 07 Mar 2025 20:44:20 +0000 |
| parents | 12615d397df7 |
| children |
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| 21:86755160afbf | 22:3dc70b59608c |
|---|---|
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="creator"/> | 6 <expand macro="creator"/> |
| 7 <requirements> | 7 <requirements> |
| 8 <requirement type="package" version="5.3.0">gawk</requirement> | 8 <requirement type="package" version="5.3.1">gawk</requirement> |
| 9 </requirements> | 9 </requirements> |
| 10 <version_command>awk --version | head -n 1</version_command> | 10 <version_command>awk --version | head -n 1</version_command> |
| 11 <command> | 11 <command> |
| 12 <![CDATA[ | 12 <![CDATA[ |
| 13 awk | 13 awk |
| 49 <data name="outfile" format_source="infile" metadata_source="infile" /> | 49 <data name="outfile" format_source="infile" metadata_source="infile" /> |
| 50 </outputs> | 50 </outputs> |
| 51 <tests> | 51 <tests> |
| 52 <test> | 52 <test> |
| 53 <param name="infile" value="replace_text_in_column1.txt" ftype="tabular" /> | 53 <param name="infile" value="replace_text_in_column1.txt" ftype="tabular" /> |
| 54 <param name="column" value="4" /> | 54 <repeat name="replacements"> |
| 55 <param name="find_pattern" value=".+_(R.)" /> | 55 <param name="column" value="4" /> |
| 56 <param name="replace_pattern" value="\\1" /> | 56 <param name="find_pattern" value=".+_(R.)" /> |
| 57 <param name="replace_pattern" value="\\1" /> | |
| 58 </repeat> | |
| 57 <output name="outfile" file="replace_text_in_column_results1.txt" /> | 59 <output name="outfile" file="replace_text_in_column_results1.txt" /> |
| 58 </test> | 60 </test> |
| 59 <test> | 61 <test> |
| 60 <param name="infile" value="replace_text_in_column1.txt" ftype="tabular" /> | 62 <param name="infile" value="replace_text_in_column1.txt" ftype="tabular" /> |
| 61 <repeat name="replacements"> | 63 <repeat name="replacements"> |