Mercurial > repos > bgruening > text_processing
comparison sort_rows.xml @ 0:5314e5d6f040 draft
Imported from capsule None
author | bgruening |
---|---|
date | Thu, 29 Jan 2015 07:53:17 -0500 |
parents | |
children | 60edf2f8c28f |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:5314e5d6f040 |
---|---|
1 <tool id="tp_sort_rows" name="Sort a row" version="@BASE_VERSION@.0"> | |
2 <description>according to their columns</description> | |
3 <macros> | |
4 <import>macros.xml</import> | |
5 </macros> | |
6 <command> | |
7 <![CDATA[ | |
8 python -c 'for line in ( "\t".join(sorted(line.strip().split("\t"))) for line in open("$infile") ): print line' > $outfile | |
9 ]]> | |
10 </command> | |
11 <inputs> | |
12 <param format="tabular" name="infile" type="data" label="Tabular file that should be sorted"/> | |
13 </inputs> | |
14 <outputs> | |
15 <data name="outfile" format_source="infile" metadata_source="infile"/> | |
16 </outputs> | |
17 <options sanitize="False"/> | |
18 <tests> | |
19 <test> | |
20 <param name="infile" value="sort_rows1.tabular" ftype="tabular" /> | |
21 <output name="outfile" file="sort_rows_results1.bed"/> | |
22 </test> | |
23 </tests> | |
24 <help> | |
25 <![CDATA[ | |
26 .. class:: infomark | |
27 | |
28 **TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert* | |
29 | |
30 **What it does** | |
31 | |
32 That tool sorts each row in a TAB separated file, according to their columns. In other words: It is a sorted reordering of all columns. | |
33 | |
34 @REFERENCES@ | |
35 ]]> | |
36 </help> | |
37 </tool> |