comparison replace_text_in_column.xml @ 6:60edf2f8c28f draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit b'e6ee273f75fff61d1e419283fa8088528cf59470\n'

5:20344ce0c811

<tool id="tp_replace_in_column" name="Replace Text" version="@BASE_VERSION@.0">
    <description>in a specific column</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <requirements>

    </requirements>
    <version_command>awk --version | head -n 1</version_command>
    <command>
<![CDATA[
        awk
            -v OFS="	"
            --re-interval
            --sandbox '{ \$$column = gensub( /$find_pattern/, "$replace_pattern", "g", \$$column ) ; print \$0 ; }'
            "$infile"
        > "$outfile"
]]>

**Note**: AWK uses extended regular expression syntax, not Perl syntax. **\\d**, **\\w**, **\\s** etc. are **not** supported.

@REFERENCES@
]]>
    </help>
</tool>

6:60edf2f8c28f

<tool id="tp_replace_in_column" name="Replace Text" version="@BASE_VERSION@.1">
    <description>in a specific column</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <requirements>

    </requirements>
    <version_command>awk --version | head -n 1</version_command>
    <command>
<![CDATA[
        awk
            -v OFS="\t"
            -v FS="\t"
            --re-interval
            --sandbox '{ \$$column = gensub( /$find_pattern/, "$replace_pattern", "g", \$$column ) ; print \$0 ; }'
            "$infile"
        > "$outfile"
]]>

**Note**: AWK uses extended regular expression syntax, not Perl syntax. **\\d**, **\\w**, **\\s** etc. are **not** supported.

@REFERENCES@
]]>
    </help>
    <expand macro="citations" />
</tool>