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comparison cat.xml @ 17:f46f0e4f75c4 draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 5f5d5802a961a77ceb092cbdef90d93e29717029-dirty"
author bgruening
date Tue, 22 Jun 2021 16:06:48 +0000
parents ddf54b12c295
children 12615d397df7
comparison
equal deleted inserted replaced
16:ddf54b12c295 17:f46f0e4f75c4
1 <tool id="tp_cat" name="Concatenate datasets" version="0.1.0"> 1 <tool id="tp_cat" name="Concatenate datasets" version="0.1.1">
2 <description>tail-to-head (cat)</description> 2 <description>tail-to-head (cat)</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
9 cat --version | head -n 1 9 cat --version | head -n 1
10 ]]> 10 ]]>
11 </version_command> 11 </version_command>
12 <command> 12 <command>
13 <![CDATA[ 13 <![CDATA[
14 cat 14 #for $file in $inputs:
15 #echo ' '.join(['"%s"' % $file for $file in $inputs])# 15 cat '$file' >> '$out_file1' &&
16 #end for
16 #for $q in $queries: 17 #for $q in $queries:
17 #echo ' '.join(['"%s"' % $file for $file in $q.inputs2])# 18 #for $file in $q.inputs2:
19 cat '$file' >> '$out_file1' &&
20 #end for
18 #end for 21 #end for
19 > $out_file1 22 exit 0
20 ]]></command> 23 ]]></command>
21 <inputs> 24 <inputs>
22 <param name="inputs" multiple="true" type="data" format="txt,fastq.gz,fasta.gz,genbank.gz,tabular.gz" label="Datasets to concatenate"/> 25 <param name="inputs" multiple="true" type="data" format="txt,fastq.gz,fasta.gz,genbank.gz,tabular.gz" label="Datasets to concatenate"/>
23 <repeat name="queries" title="Dataset"> 26 <repeat name="queries" title="Dataset">
24 <param name="inputs2" type="data" format="txt,fastq.gz,fasta.gz,genbank.gz,tabular.gz" multiple="True" label="Select" /> 27 <param name="inputs2" type="data" format="txt,fastq.gz,fasta.gz,genbank.gz,tabular.gz" multiple="True" label="Select" />