Mercurial > repos > bgruening > text_processing
comparison unfold_column.py @ 17:f46f0e4f75c4 draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 5f5d5802a961a77ceb092cbdef90d93e29717029-dirty"
author | bgruening |
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date | Tue, 22 Jun 2021 16:06:48 +0000 |
parents | 37e1eb05b1b4 |
children |
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16:ddf54b12c295 | 17:f46f0e4f75c4 |
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1 #!/usr/bin/env python | 1 #!/usr/bin/env python |
2 | 2 |
3 import sys | 3 import sys |
4 | 4 |
5 out = open(sys.argv[4], 'w+') | 5 out = open(sys.argv[4], "w+") |
6 | 6 |
7 sep = sys.argv[3] | 7 sep = sys.argv[3] |
8 # un-sanitize Galaxy inputs | 8 # un-sanitize Galaxy inputs |
9 if sep == 'X': | 9 if sep == "X": |
10 sep = ';' | 10 sep = ";" |
11 | 11 |
12 with open(sys.argv[1]) as handle: | 12 with open(sys.argv[1]) as handle: |
13 for line in handle: | 13 for line in handle: |
14 cols = line.split('\t') | 14 cols = line.split("\t") |
15 unfolding_column = int(sys.argv[2]) - 1 | 15 unfolding_column = int(sys.argv[2]) - 1 |
16 column_content = cols[ unfolding_column ] | 16 column_content = cols[unfolding_column] |
17 for elem in column_content.split( sep ): | 17 for elem in column_content.split(sep): |
18 out.write( '\t'.join( cols[:unfolding_column] + [elem] + cols[unfolding_column+1:]) ) | 18 out.write( |
19 "\t".join( | |
20 cols[:unfolding_column] + [elem] + cols[unfolding_column + 1:] | |
21 ) | |
22 ) | |
19 out.close() | 23 out.close() |