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comparison easyjoin.xml @ 14:fb4ff3c42cd3 draft

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 09b22cceacb34dd4c6c1b42890f93232df128208"
author bgruening
date Sat, 21 Mar 2020 13:49:11 -0400
parents 01ca80da2266
children 12615d397df7
comparison
equal deleted inserted replaced
13:0a8c6b61f0f4 14:fb4ff3c42cd3
1 <tool id="tp_easyjoin_tool" name="Join" version="@BASE_VERSION@.1"> 1 <tool id="tp_easyjoin_tool" name="Join" version="@BASE_VERSION@.2">
2 <description>two files</description> 2 <description>two files</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"> 6 <expand macro="requirements">
11 <![CDATA[ 11 <![CDATA[
12 cp $__tool_directory__/sort-header ./ && 12 cp $__tool_directory__/sort-header ./ &&
13 chmod +x sort-header && 13 chmod +x sort-header &&
14 perl $__tool_directory__/easyjoin 14 perl $__tool_directory__/easyjoin
15 $jointype 15 $jointype
16 -t ' ' 16 -t $'\t'
17 $header 17 $header
18 -e '$empty_string_filler' 18 -e '$empty_string_filler'
19 -o auto 19 -o auto
20 $ignore_case 20 $ignore_case
21 -1 '$column1' 21 -1 '$column1'
27 </command> 27 </command>
28 <inputs> 28 <inputs>
29 <param name="infile1" format="tabular" type="data" label="1st file" /> 29 <param name="infile1" format="tabular" type="data" label="1st file" />
30 <param name="column1" label="Column to use from 1st file" type="data_column" data_ref="infile1" accept_default="true" /> 30 <param name="column1" label="Column to use from 1st file" type="data_column" data_ref="infile1" accept_default="true" />
31 31
32 <param name="infile2" format="txt" type="data" label="2nd File" /> 32 <param name="infile2" format="tabular" type="data" label="2nd File" />
33 <param name="column2" label="Column to use from 2nd file" type="data_column" data_ref="infile2" accept_default="true" /> 33 <param name="column2" label="Column to use from 2nd file" type="data_column" data_ref="infile2" accept_default="true" />
34 34
35 <param name="jointype" type="select" label="Output lines appearing in"> 35 <param name="jointype" type="select" label="Output lines appearing in">
36 <option value=" " selected="True">Both 1st &amp; 2nd file.</option> 36 <option value=" " selected="True">Both 1st &amp; 2nd file.</option>
37 <option value="-v 1">1st but not in 2nd file. (-v 1)</option> 37 <option value="-v 1">1st but not in 2nd file. (-v 1)</option>