comparison cut.xml @ 21:86755160afbf draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit c2b1677d1c94433f777c2dc28ac8eec0a99cc6a7

20:fbf99087e067

<tool id="tp_cut_tool" name="Advanced Cut" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
    <description>columns from a table (cut)</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />

            $complement
            $cut_type_options.cut_element
            #if $cut_type_options.cut_element != '-f'
                '$cut_type_options.list'
            #else
                #if str($cut_type_options.delimiter) != '':
                    -d"$cut_type_options.delimiter"
                #end if
                '$cut_type_options.colnames_option.list'
            #end if
            '$input'
        > '$output'
]]>
    </command>

        <test expect_num_outputs="1">
            <param name="input" value="cut1.txt"/>
            <param name="list" value="1,3,4"/>
            <param name="delimiter" value=""/>
            <output name="output" file="cut_results1.txt"/>
        </test>
        <test expect_num_outputs="1">
            <param name="input" value="cut1.txt"/>
            <conditional name="cut_type_options">
                <param name="delimiter" value="" />
                <conditional name="colnames_option">

                    <param name="list" value="2" />
                </conditional>
            </conditional>
            <param name="complement" value="--complement" />
            <output name="output" file="cut_results2.txt"/>
        </test>
        <test expect_num_outputs="1">
            <param name="input" value="cut1.txt"/>
            <param name="list" value="-3" />
            <param name="delimiter" value="" />

21:86755160afbf

<tool id="tp_cut_tool" name="Advanced Cut" version="@TOOL_VERSION@+galaxy2" profile="@PROFILE@">
    <description>columns from a table (cut)</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />

            $complement
            $cut_type_options.cut_element
            #if $cut_type_options.cut_element != '-f'
                '$cut_type_options.list'
            #else
                '$cut_type_options.colnames_option.list'
                #if str($cut_type_options.delimiter) != '':
                    -d"$cut_type_options.delimiter"
                #end if
            #end if
            '$input'
        > '$output'
]]>
    </command>

        <test expect_num_outputs="1">
            <param name="input" value="cut1.txt"/>
            <param name="list" value="1,3,4"/>
            <param name="delimiter" value=""/>
            <output name="output" file="cut_results1.txt"/>
            <assert_command>
                <has_text text="-f '1,3,4'"/>
            </assert_command>
        </test>

        <test expect_num_outputs="1">
            <param name="input" value="cut1.txt"/>
            <conditional name="cut_type_options">
                <param name="delimiter" value="" />
                <conditional name="colnames_option">

                    <param name="list" value="2" />
                </conditional>
            </conditional>
            <param name="complement" value="--complement" />
            <output name="output" file="cut_results2.txt"/>
            <assert_command>
                <has_text text="-f '2'"/>
            </assert_command>
        </test>
        <test expect_num_outputs="1">
            <param name="input" value="cut1.txt"/>
            <param name="list" value="-3" />
            <param name="delimiter" value="" />