Mercurial > repos > bgruening > text_processing
diff sort_rows.xml @ 0:5314e5d6f040 draft
Imported from capsule None
author | bgruening |
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date | Thu, 29 Jan 2015 07:53:17 -0500 |
parents | |
children | 60edf2f8c28f |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/sort_rows.xml Thu Jan 29 07:53:17 2015 -0500 @@ -0,0 +1,37 @@ +<tool id="tp_sort_rows" name="Sort a row" version="@BASE_VERSION@.0"> + <description>according to their columns</description> + <macros> + <import>macros.xml</import> + </macros> + <command> +<![CDATA[ + python -c 'for line in ( "\t".join(sorted(line.strip().split("\t"))) for line in open("$infile") ): print line' > $outfile +]]> + </command> + <inputs> + <param format="tabular" name="infile" type="data" label="Tabular file that should be sorted"/> + </inputs> + <outputs> + <data name="outfile" format_source="infile" metadata_source="infile"/> + </outputs> + <options sanitize="False"/> + <tests> + <test> + <param name="infile" value="sort_rows1.tabular" ftype="tabular" /> + <output name="outfile" file="sort_rows_results1.bed"/> + </test> + </tests> + <help> +<![CDATA[ +.. class:: infomark + +**TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert* + +**What it does** + +That tool sorts each row in a TAB separated file, according to their columns. In other words: It is a sorted reordering of all columns. + +@REFERENCES@ +]]> + </help> +</tool>