view sort_rows.xml @ 19:12615d397df7 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 70980e329cd9fa78e74bf14a76fd4ded9bd2b91f

<tool id="tp_sort_rows" name="Sort a row" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
    <description>according to their columns</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="creator"/>
    <requirements>
        <requirement type="package" version="3.12">python</requirement>
    </requirements>
    <command>
<![CDATA[
    python -c 'for line in ( "\t".join(sorted(line.strip().split("\t"))) for line in open("$infile") ): print(line)' > '$outfile'
]]>
    </command>
    <inputs>
        <param format="tabular" name="infile" type="data" label="Tabular file that should be sorted"/>
    </inputs>
    <outputs>
        <data name="outfile" format_source="infile" metadata_source="infile"/>
    </outputs>
    <options sanitize="False"/>
    <tests>
        <test>
            <param name="infile" value="sort_rows1.tabular" ftype="tabular" />
            <output name="outfile" file="sort_rows_results1.bed"/>
        </test>
    </tests>
    <help>
<![CDATA[
.. class:: infomark

**TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert*

**What it does**

That tool sorts each row in a TAB separated file, according to their columns. In other words: It is a sorted reordering of all columns.

]]>
    </help>
    <expand macro="citations" />
</tool>