Mercurial > repos > bgruening > text_processing
view cat.xml @ 1:43b1f073b693 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 369e40078146d00608d52205bb8cee66ae735b76-dirty
author | bgruening |
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date | Tue, 30 Jun 2015 16:23:23 -0400 |
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children | 616efa22d193 |
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<tool id="tp_cat" name="Concatenate datasets" version="0.1.0"> <description>tail-to-head (cat)</description> <requirements> <requirement type="package" version="8.22">gnu_coreutils</requirement> </requirements> <version_command> <![CDATA[ cat --version | head -n 1 ]]> </version_command> <command> <![CDATA[ cat #for $file in $inputs: "${file}" #end for > $out_file1 ]]></command> <inputs> <param name="inputs" multiple="true" type="data" format="txt" label="datasets to concatenate"/> </inputs> <outputs> <data name="out_file1" format_source="inputs" metadata_source="inputs"/> </outputs> <tests> <test> <param name="inputs" value="sort_result1.bed,sort_result2.bed,sort_result3.bed"/> <output name="out_file1" file="cat_result1.txt"/> </test> </tests> <help> <![CDATA[ .. class:: warningmark **WARNING:** Be careful not to concatenate datasets of different kinds (e.g., sequences with intervals). This tool does not check if the datasets being concatenated are in the same format. ----- **What it does** Concatenates datasets ----- **Example** Concatenating Dataset:: chrX 151087187 151087355 A 0 - chrX 151572400 151572481 B 0 + with Dataset1:: chr1 151242630 151242955 X 0 + chr1 151271715 151271999 Y 0 + chr1 151278832 151279227 Z 0 - and with Dataset2:: chr2 100000030 200000955 P 0 + chr2 100000015 200000999 Q 0 + will result in the following:: chrX 151087187 151087355 A 0 - chrX 151572400 151572481 B 0 + chr1 151242630 151242955 X 0 + chr1 151271715 151271999 Y 0 + chr1 151278832 151279227 Z 0 - chr2 100000030 200000955 P 0 + chr2 100000015 200000999 Q 0 + ]]></help> </tool>