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4
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1
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2 SUMMARISING RUN PARAMETERS
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3 ==========================
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4 Input filename: ./input_mate1
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5 Quality Phred score cutoff: 20
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6 Quality encoding type selected: ASCII+33
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7 Adapter sequence: 'AGATCGGAAGAGC'
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8 Maximum trimming error rate: 0.1 (default)
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9 Minimum required adapter overlap (stringency): 1 bp
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10 Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp
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11
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12
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13 cutadapt version 1.1
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14 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a AGATCGGAAGAGC ./input_mate1
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15 Maximum error rate: 10.00%
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16 Processed reads: 100
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17 Trimmed reads: 20 ( 20.0%)
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18 Total basepairs: 24894 (0.0 Mbp)
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19 Trimmed basepairs: 26 (0.0 Mbp) (0.10% of total)
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20 Too short reads: 0 ( 0.0% of processed reads)
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21 Too long reads: 0 ( 0.0% of processed reads)
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22 Total time: 0.01 s
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23 Time per read: 0.05 ms
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24
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25 === Adapter 1 ===
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26
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27 Adapter 'AGATCGGAAGAGC', length 13, was trimmed 20 times.
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28
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29 Lengths of removed sequences
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30 length count expected
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31 1 16 25.0
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32 2 2 6.2
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33 3 2 1.6
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34
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35
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36 RUN STATISTICS FOR INPUT FILE: ./input_mate1
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37 =============================================
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38 100 sequences processed in total
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39 Sequences removed because they became shorter than the length cutoff of 20 bp: 0 (0.0%)
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40
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