comparison test-data/sanger_full_range_report_results2.txt @ 4:2c1f0fe810f7 draft

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author bgruening
date Wed, 15 Apr 2015 11:32:11 -0400
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3:eb546ac2aab2 4:2c1f0fe810f7
1
2 SUMMARISING RUN PARAMETERS
3 ==========================
4 Input filename: ./input_mate1
5 Quality Phred score cutoff: 20
6 Quality encoding type selected: ASCII+33
7 Adapter sequence: 'AGATCGGAAGAGC'
8 Maximum trimming error rate: 0.1 (default)
9 Minimum required adapter overlap (stringency): 1 bp
10 Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp
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12
13 cutadapt version 1.1
14 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a AGATCGGAAGAGC ./input_mate1
15 Maximum error rate: 10.00%
16 Processed reads: 100
17 Trimmed reads: 20 ( 20.0%)
18 Total basepairs: 24894 (0.0 Mbp)
19 Trimmed basepairs: 26 (0.0 Mbp) (0.10% of total)
20 Too short reads: 0 ( 0.0% of processed reads)
21 Too long reads: 0 ( 0.0% of processed reads)
22 Total time: 0.01 s
23 Time per read: 0.05 ms
24
25 === Adapter 1 ===
26
27 Adapter 'AGATCGGAAGAGC', length 13, was trimmed 20 times.
28
29 Lengths of removed sequences
30 length count expected
31 1 16 25.0
32 2 2 6.2
33 3 2 1.6
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35
36 RUN STATISTICS FOR INPUT FILE: ./input_mate1
37 =============================================
38 100 sequences processed in total
39 Sequences removed because they became shorter than the length cutoff of 20 bp: 0 (0.0%)
40