Mercurial > repos > bgruening > trim_galore
comparison test-data/sanger_full_range_report_results2.txt @ 4:2c1f0fe810f7 draft
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author | bgruening |
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date | Wed, 15 Apr 2015 11:32:11 -0400 |
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3:eb546ac2aab2 | 4:2c1f0fe810f7 |
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1 | |
2 SUMMARISING RUN PARAMETERS | |
3 ========================== | |
4 Input filename: ./input_mate1 | |
5 Quality Phred score cutoff: 20 | |
6 Quality encoding type selected: ASCII+33 | |
7 Adapter sequence: 'AGATCGGAAGAGC' | |
8 Maximum trimming error rate: 0.1 (default) | |
9 Minimum required adapter overlap (stringency): 1 bp | |
10 Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp | |
11 | |
12 | |
13 cutadapt version 1.1 | |
14 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a AGATCGGAAGAGC ./input_mate1 | |
15 Maximum error rate: 10.00% | |
16 Processed reads: 100 | |
17 Trimmed reads: 20 ( 20.0%) | |
18 Total basepairs: 24894 (0.0 Mbp) | |
19 Trimmed basepairs: 26 (0.0 Mbp) (0.10% of total) | |
20 Too short reads: 0 ( 0.0% of processed reads) | |
21 Too long reads: 0 ( 0.0% of processed reads) | |
22 Total time: 0.01 s | |
23 Time per read: 0.05 ms | |
24 | |
25 === Adapter 1 === | |
26 | |
27 Adapter 'AGATCGGAAGAGC', length 13, was trimmed 20 times. | |
28 | |
29 Lengths of removed sequences | |
30 length count expected | |
31 1 16 25.0 | |
32 2 2 6.2 | |
33 3 2 1.6 | |
34 | |
35 | |
36 RUN STATISTICS FOR INPUT FILE: ./input_mate1 | |
37 ============================================= | |
38 100 sequences processed in total | |
39 Sequences removed because they became shorter than the length cutoff of 20 bp: 0 (0.0%) | |
40 |