comparison test-data/sanger_full_range_report_results1.txt @ 11:80cd83b11214 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/trim_galore commit 78bee2b2efd36fe9399ce574159fc007cb6bdfbf
author bgruening
date Mon, 24 Apr 2017 14:30:07 -0400
parents b4e39d993fc8
children 084bbd8ba7b8
comparison
equal deleted inserted replaced
10:b4e39d993fc8 11:80cd83b11214
1 1
2 SUMMARISING RUN PARAMETERS 2 SUMMARISING RUN PARAMETERS
3 ========================== 3 ==========================
4 Input filename: input_1.fastq 4 Input filename: input_1.fastq
5 Trimming mode: single-end 5 Trimming mode: single-end
6 Trim Galore version: 0.4.0 6 Trim Galore version: 0.4.3
7 Cutadapt version: 1.8 7 Cutadapt version: 1.13
8 Quality Phred score cutoff: 20 8 Quality Phred score cutoff: 20
9 Quality encoding type selected: ASCII+33 9 Quality encoding type selected: ASCII+33
10 Adapter sequence: 'AGATCGGAAGAGC' (Illumina TruSeq, Sanger iPCR; default (inconclusive auto-detection)) 10 Adapter sequence: 'AGATCGGAAGAGC' (Illumina TruSeq, Sanger iPCR; default (inconclusive auto-detection))
11 Maximum trimming error rate: 0.1 (default) 11 Maximum trimming error rate: 0.1 (default)
12 Minimum required adapter overlap (stringency): 1 bp 12 Minimum required adapter overlap (stringency): 1 bp
13 Minimum required sequence length before a sequence gets removed: 20 bp 13 Minimum required sequence length before a sequence gets removed: 20 bp
14 14
15 15
16 This is cutadapt 1.8 with Python 3.5.3 16 This is cutadapt 1.13 with Python 3.5.3
17 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a AGATCGGAAGAGC input_1.fastq 17 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a AGATCGGAAGAGC input_1.fastq
18 Trimming 1 adapter(s) with at most 10.0% errors in single-end mode ... 18 Trimming 1 adapter with at most 10.0% errors in single-end mode ...
19 Finished in 0.10 s (50000 us/read; 0.00 M reads/minute). 19 Finished in 0.01 s (5000 us/read; 0.01 M reads/minute).
20 20
21 === Summary === 21 === Summary ===
22 22
23 Total reads processed: 2 23 Total reads processed: 2
24 Reads with adapters: 1 (50.0%) 24 Reads with adapters: 1 (50.0%)