Mercurial > repos > bgruening > trim_galore
comparison test-data/sanger_full_range_report_results1gz.txt @ 11:80cd83b11214 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/trim_galore commit 78bee2b2efd36fe9399ce574159fc007cb6bdfbf
author | bgruening |
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date | Mon, 24 Apr 2017 14:30:07 -0400 |
parents | b4e39d993fc8 |
children | 084bbd8ba7b8 |
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10:b4e39d993fc8 | 11:80cd83b11214 |
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1 | 1 |
2 SUMMARISING RUN PARAMETERS | 2 SUMMARISING RUN PARAMETERS |
3 ========================== | 3 ========================== |
4 Input filename: input_1.fastq.gz | 4 Input filename: input_1.fastq.gz |
5 Trimming mode: single-end | 5 Trimming mode: single-end |
6 Trim Galore version: 0.4.0 | 6 Trim Galore version: 0.4.3 |
7 Cutadapt version: 1.8 | 7 Cutadapt version: 1.13 |
8 Quality Phred score cutoff: 20 | 8 Quality Phred score cutoff: 20 |
9 Quality encoding type selected: ASCII+33 | 9 Quality encoding type selected: ASCII+33 |
10 Adapter sequence: 'AGATCGGAAGAGC' (Illumina TruSeq, Sanger iPCR; default (inconclusive auto-detection)) | 10 Adapter sequence: 'AGATCGGAAGAGC' (Illumina TruSeq, Sanger iPCR; default (inconclusive auto-detection)) |
11 Maximum trimming error rate: 0.1 (default) | 11 Maximum trimming error rate: 0.1 (default) |
12 Minimum required adapter overlap (stringency): 1 bp | 12 Minimum required adapter overlap (stringency): 1 bp |
13 Minimum required sequence length before a sequence gets removed: 20 bp | 13 Minimum required sequence length before a sequence gets removed: 20 bp |
14 Output file will be GZIP compressed | 14 Output file will be GZIP compressed |
15 | 15 |
16 | 16 |
17 This is cutadapt 1.8 with Python 3.5.3 | 17 This is cutadapt 1.13 with Python 3.5.3 |
18 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a AGATCGGAAGAGC input_1.fastq.gz | 18 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a AGATCGGAAGAGC input_1.fastq.gz |
19 Trimming 1 adapter(s) with at most 10.0% errors in single-end mode ... | 19 Trimming 1 adapter with at most 10.0% errors in single-end mode ... |
20 Finished in 0.10 s (50000 us/read; 0.00 M reads/minute). | 20 Finished in 0.01 s (5000 us/read; 0.01 M reads/minute). |
21 | 21 |
22 === Summary === | 22 === Summary === |
23 | 23 |
24 Total reads processed: 2 | 24 Total reads processed: 2 |
25 Reads with adapters: 1 (50.0%) | 25 Reads with adapters: 1 (50.0%) |