Mercurial > repos > bgruening > trim_galore

comparison test-data/paired_collection_example_results3.txt @ 10:b4e39d993fc8 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/trim_galore commit bbef69cc08154b5c156c25f9ca43df0915803856
author bgruening
date Thu, 20 Apr 2017 09:14:30 -0400
parents 11962ce40855
children 80cd83b11214
comparison
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9:1bfc7254232e 10:b4e39d993fc8
1 1
2 SUMMARISING RUN PARAMETERS 2 SUMMARISING RUN PARAMETERS
3 ========================== 3 ==========================
4 Input filename: ./input_mate1 4 Input filename: input_1.fastq
5 Trimming mode: paired-end 5 Trimming mode: paired-end
6 Trim Galore version: 0.4.0 6 Trim Galore version: 0.4.0
7 Cutadapt version: 1.8 7 Cutadapt version: 1.8
8 Quality Phred score cutoff: 20 8 Quality Phred score cutoff: 20
9 Quality encoding type selected: ASCII+33 9 Quality encoding type selected: ASCII+33
13 Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp 13 Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp
14 Length cut-off for read 1: 35 bp (default) 14 Length cut-off for read 1: 35 bp (default)
15 Length cut-off for read 2: 35 bp (default) 15 Length cut-off for read 2: 35 bp (default)
16 16
17 17
18 This is cutadapt 1.8 with Python 2.7.9 18 This is cutadapt 1.8 with Python 3.5.3
19 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA ./input_mate1 19 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA input_1.fastq
20 Trimming 1 adapter(s) with at most 10.0% errors in single-end mode ... 20 Trimming 1 adapter(s) with at most 10.0% errors in single-end mode ...
21 Finished in 0.10 s (1010 us/read; 0.06 M reads/minute). 21 Finished in 0.10 s (1010 us/read; 0.06 M reads/minute).
22 22
23 === Summary === 23 === Summary ===
24 24
74 73 1 0.0 1 1 74 73 1 0.0 1 1
75 80 1 0.0 1 1 75 80 1 0.0 1 1
76 86 1 0.0 1 1 76 86 1 0.0 1 1
77 77
78 78
79 RUN STATISTICS FOR INPUT FILE: ./input_mate1 79 RUN STATISTICS FOR INPUT FILE: input_1.fastq
80 ============================================= 80 =============================================
81 99 sequences processed in total 81 99 sequences processed in total
82 82
83 83
84 SUMMARISING RUN PARAMETERS 84 SUMMARISING RUN PARAMETERS
85 ========================== 85 ==========================
86 Input filename: ./input_mate2 86 Input filename: input_2.fastq
87 Trimming mode: paired-end 87 Trimming mode: paired-end
88 Trim Galore version: 0.4.0 88 Trim Galore version: 0.4.0
89 Cutadapt version: 1.8 89 Cutadapt version: 1.8
90 Quality Phred score cutoff: 20 90 Quality Phred score cutoff: 20
91 Quality encoding type selected: ASCII+33 91 Quality encoding type selected: ASCII+33
95 Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp 95 Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp
96 Length cut-off for read 1: 35 bp (default) 96 Length cut-off for read 1: 35 bp (default)
97 Length cut-off for read 2: 35 bp (default) 97 Length cut-off for read 2: 35 bp (default)
98 98
99 99
100 This is cutadapt 1.8 with Python 2.7.9 100 This is cutadapt 1.8 with Python 3.5.3
101 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA ./input_mate2 101 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a CTGTCTCTTATA input_2.fastq
102 Trimming 1 adapter(s) with at most 10.0% errors in single-end mode ... 102 Trimming 1 adapter(s) with at most 10.0% errors in single-end mode ...
103 Finished in 0.10 s (1000 us/read; 0.06 M reads/minute). 103 Finished in 0.10 s (1000 us/read; 0.06 M reads/minute).
104 104
105 === Summary === 105 === Summary ===
106 106
159 60 1 0.0 1 1 159 60 1 0.0 1 1
160 67 1 0.0 1 1 160 67 1 0.0 1 1
161 80 1 0.0 1 1 161 80 1 0.0 1 1
162 162
163 163
164 RUN STATISTICS FOR INPUT FILE: ./input_mate2 164 RUN STATISTICS FOR INPUT FILE: input_2.fastq
165 ============================================= 165 =============================================
166 100 sequences processed in total 166 100 sequences processed in total
167 167
168 Total number of sequences analysed for the sequence pair length validation: 99 168 Total number of sequences analysed for the sequence pair length validation: 99
169 169