Mercurial > repos > bgruening > trim_galore

comparison test-data/sanger_full_range_report_results1.txt @ 10:b4e39d993fc8 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/trim_galore commit bbef69cc08154b5c156c25f9ca43df0915803856
author bgruening
date Thu, 20 Apr 2017 09:14:30 -0400
parents 11962ce40855
children 80cd83b11214
comparison
equal deleted inserted replaced
9:1bfc7254232e 10:b4e39d993fc8
1 1
2 SUMMARISING RUN PARAMETERS 2 SUMMARISING RUN PARAMETERS
3 ========================== 3 ==========================
4 Input filename: ./input_singles 4 Input filename: input_1.fastq
5 Trimming mode: single-end 5 Trimming mode: single-end
6 Trim Galore version: 0.4.0 6 Trim Galore version: 0.4.0
7 Cutadapt version: 1.8 7 Cutadapt version: 1.8
8 Quality Phred score cutoff: 20 8 Quality Phred score cutoff: 20
9 Quality encoding type selected: ASCII+33 9 Quality encoding type selected: ASCII+33
11 Maximum trimming error rate: 0.1 (default) 11 Maximum trimming error rate: 0.1 (default)
12 Minimum required adapter overlap (stringency): 1 bp 12 Minimum required adapter overlap (stringency): 1 bp
13 Minimum required sequence length before a sequence gets removed: 20 bp 13 Minimum required sequence length before a sequence gets removed: 20 bp
14 14
15 15
16 This is cutadapt 1.8 with Python 2.7.9 16 This is cutadapt 1.8 with Python 3.5.3
17 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a AGATCGGAAGAGC ./input_singles 17 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a AGATCGGAAGAGC input_1.fastq
18 Trimming 1 adapter(s) with at most 10.0% errors in single-end mode ... 18 Trimming 1 adapter(s) with at most 10.0% errors in single-end mode ...
19 Finished in 0.10 s (50000 us/read; 0.00 M reads/minute). 19 Finished in 0.10 s (50000 us/read; 0.00 M reads/minute).
20 20
21 === Summary === 21 === Summary ===
22 22
45 Overview of removed sequences 45 Overview of removed sequences
46 length count expect max.err error counts 46 length count expect max.err error counts
47 1 1 0.5 0 1 47 1 1 0.5 0 1
48 48
49 49
50 RUN STATISTICS FOR INPUT FILE: ./input_singles 50 RUN STATISTICS FOR INPUT FILE: input_1.fastq
51 ============================================= 51 =============================================
52 2 sequences processed in total 52 2 sequences processed in total
53 Sequences removed because they became shorter than the length cutoff of 20 bp: 0 (0.0%) 53 Sequences removed because they became shorter than the length cutoff of 20 bp: 0 (0.0%)
54 54