Mercurial > repos > bgruening > trim_galore
diff test-data/sanger_full_range_report_results2.txt @ 4:2c1f0fe810f7 draft
Uploaded
author | bgruening |
---|---|
date | Wed, 15 Apr 2015 11:32:11 -0400 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sanger_full_range_report_results2.txt Wed Apr 15 11:32:11 2015 -0400 @@ -0,0 +1,40 @@ + +SUMMARISING RUN PARAMETERS +========================== +Input filename: ./input_mate1 +Quality Phred score cutoff: 20 +Quality encoding type selected: ASCII+33 +Adapter sequence: 'AGATCGGAAGAGC' +Maximum trimming error rate: 0.1 (default) +Minimum required adapter overlap (stringency): 1 bp +Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp + + +cutadapt version 1.1 +Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a AGATCGGAAGAGC ./input_mate1 +Maximum error rate: 10.00% + Processed reads: 100 + Trimmed reads: 20 ( 20.0%) + Total basepairs: 24894 (0.0 Mbp) + Trimmed basepairs: 26 (0.0 Mbp) (0.10% of total) + Too short reads: 0 ( 0.0% of processed reads) + Too long reads: 0 ( 0.0% of processed reads) + Total time: 0.01 s + Time per read: 0.05 ms + +=== Adapter 1 === + +Adapter 'AGATCGGAAGAGC', length 13, was trimmed 20 times. + +Lengths of removed sequences +length count expected +1 16 25.0 +2 2 6.2 +3 2 1.6 + + +RUN STATISTICS FOR INPUT FILE: ./input_mate1 +============================================= +100 sequences processed in total +Sequences removed because they became shorter than the length cutoff of 20 bp: 0 (0.0%) +