diff test-data/sanger_full_range_report_results1gz.txt @ 10:b4e39d993fc8 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/trim_galore commit bbef69cc08154b5c156c25f9ca43df0915803856

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/sanger_full_range_report_results1gz.txt	Thu Apr 20 09:14:30 2017 -0400
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+
+SUMMARISING RUN PARAMETERS
+==========================
+Input filename: input_1.fastq.gz
+Trimming mode: single-end
+Trim Galore version: 0.4.0
+Cutadapt version: 1.8
+Quality Phred score cutoff: 20
+Quality encoding type selected: ASCII+33
+Adapter sequence: 'AGATCGGAAGAGC' (Illumina TruSeq, Sanger iPCR; default (inconclusive auto-detection))
+Maximum trimming error rate: 0.1 (default)
+Minimum required adapter overlap (stringency): 1 bp
+Minimum required sequence length before a sequence gets removed: 20 bp
+Output file will be GZIP compressed
+
+
+This is cutadapt 1.8 with Python 3.5.3
+Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a AGATCGGAAGAGC input_1.fastq.gz
+Trimming 1 adapter(s) with at most 10.0% errors in single-end mode ...
+Finished in 0.10 s (50000 us/read; 0.00 M reads/minute).
+
+=== Summary ===
+
+Total reads processed:                       2
+Reads with adapters:                         1 (50.0%)
+Reads written (passing filters):             2 (100.0%)
+
+Total basepairs processed:           188 bp
+Quality-trimmed:                      20 bp (10.6%)
+Total written (filtered):            167 bp (88.8%)
+
+=== Adapter 1 ===
+
+Sequence: AGATCGGAAGAGC; Type: regular 3'; Length: 13; Trimmed: 1 times.
+
+No. of allowed errors:
+0-9 bp: 0; 10-13 bp: 1
+
+Bases preceding removed adapters:
+  A: 0.0%
+  C: 100.0%
+  G: 0.0%
+  T: 0.0%
+  none/other: 0.0%
+
+Overview of removed sequences
+length	count	expect	max.err	error counts
+1	1	0.5	0	1
+
+
+RUN STATISTICS FOR INPUT FILE: input_1.fastq.gz
+=============================================
+2 sequences processed in total
+Sequences removed because they became shorter than the length cutoff of 20 bp:	0 (0.0%)
+