Mercurial > repos > bgruening > trim_galore

diff test-data/paired_hardtrimmed5_pair2_.fastqsanger @ 16:cd7e644cae1d draft default tip

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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/trim_galore commit 276a0ec327f5369c16563696047f0d31577c353f"
author bgruening
date Fri, 08 Oct 2021 09:57:52 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/paired_hardtrimmed5_pair2_.fastqsanger	Fri Oct 08 09:57:52 2021 +0000
@@ -0,0 +1,396 @@
+@M01368:8:000000000-A3GHV:1:1101:6911:8255/1
+ATCTGGTTCCTACTTCAGGG
++
+BCCCCFFFFFFFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1101:14518:9998/1
+GTTATTATTATGTCCTACAA
++
+AAAAAFFFFFFFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1101:18422:19051/1
+GTATCCGACATCTGGTTCCT
++
+CCCCCFDDDDDFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1101:25545:21098/1
+ATTAATTAACACACTTTAGT
++
+33AA?DFD5BDFGGGFEBDG
+@M01368:8:000000000-A3GHV:1:1101:5446:12248/1
+AATTAACACACTTTAGTAAG
++
+CCCCDFFFFCCFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1101:5861:6452/1
+ATTATGTCCTACAAGCATTA
++
+ABCCCFFFFFFFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1102:10403:6021/1
+CGCTCCGGGCCCATAACACT
++
+>A@AAAAD2ADDFFGGGGGF
+@M01368:8:000000000-A3GHV:1:1102:10677:23253/1
+CCTTAAATAAGACATCACGA
++
+ABBBBFFFFFFFGGGGGGGC
+@M01368:8:000000000-A3GHV:1:1102:13809:1733/1
+ATATTGAACGTAGGTGCGAT
++
+BCCBCFFFFFBFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1102:17584:10050/1
+ATCAAAGACAGATACTGCGA
++
+CCCCCFFFFFFFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1102:18842:24844/1
+CACTTGGGGGTAGCTAAAGT
++
+BBBCBFF@CCBBGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1102:21788:11027/1
+GCCCACACGTTCCCCTTAAA
++
+ABCCBCCBBFFFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1102:5728:8777/1
+ATATTGAACGTAGGTGCGAT
++
+BBBBBFFFFFAFGG5GGGGG
+@M01368:8:000000000-A3GHV:1:1102:5983:21093/1
+GTATCCGACATCTGGTTCCT
++
+AAABCFCABBCFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1102:7765:18353/1
+CTCCGGGCCCATAACACTTG
++
+CCDCCCCCCBCFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1103:10405:17879/1
+GTATCCGACATCTGGTTCCT
++
+CBCCCFCCCCCFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1103:13493:8205/1
+GTAGCTAAAGTGAACTGTAT
++
+CCCCCFFFFFFFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1103:14060:21273/1
+GTATCCGACATCTGGTTCCT
++
+AAABAFCCCCCFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1103:14528:12993/1
+GCCCATAACACTTGGGGGTA
++
+BBBBBFFFBDFFGFBCG2EG
+@M01368:8:000000000-A3GHV:1:1103:17657:20856/1
+AAAGCGAACTGTATCCGACA
++
+ABB?AABBBBFFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1103:23099:3794/1
+AAGACAGATACTGCGACATA
++
+BBBBBFFFFFFFGGEEGGFG
+@M01368:8:000000000-A3GHV:1:1103:25465:20010/1
+GACATAGGGTGCTCCGGCTC
++
+ABBBBFFFFBAAGGGFEFGG
+@M01368:8:000000000-A3GHV:1:1103:25519:6301/1
+AAATAAGACATCACGATGGA
++
+3A3AAFFFFBFFGGG2CF?4
+@M01368:8:000000000-A3GHV:1:1103:6074:6549/1
+TAACACTTGGGGGTAGCTAA
++
+CCCBCFFFFFCCGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1104:11572:8264/1
+GTATCCGACATCTGGTTCCT
++
+BABCBFBACCCFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1104:11928:24197/1
+ACGTAGGTGCGATAAATAAT
++
+CDDCCFCFFFBCGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1104:12288:20635/1
+CACTTGGGGGTAGCTAAAGT
++
+ABA?AFBAB2>AFGGGGFFG
+@M01368:8:000000000-A3GHV:1:1104:13832:4398/1
+CACGATGGATCACAGGTCTA
++
+AAABABCAFFFFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1104:23670:4161/1
+ATTCAATTGTTATTATTATG
++
+AAAABFFFFFFFGGGGGGGC
+@M01368:8:000000000-A3GHV:1:1104:24927:22253/1
+AGCTAAAGTGAACTGTATCC
++
+AAA?AFFF3DFFFGGBGFF3
+@M01368:8:000000000-A3GHV:1:1104:4705:7727/1
+CTACAAGCATTAATTAATTA
++
+BBBBBFFBFFFFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1104:7756:4776/1
+GGCCCATAACACTTGGGGGT
++
+CCCCCCFFFFFFGGGGGGGE
+@M01368:8:000000000-A3GHV:1:1105:11310:21761/1
+ATAAATAATAGGATGAGGCA
++
+CCCCBFFFFFFFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1105:11578:14676/1
+ATTGAACGTAGGTGCGATAA
++
+CDDDDFFFBFFCGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1105:13575:19255/1
+TTAGTAAGTATGTTCGCCTG
++
+AA1A1DFFFFFBGG3A111F
+@M01368:8:000000000-A3GHV:1:1105:15502:11453/1
+GTCCTACAAGCATTAATTAA
++
+A3AAAFFFFFCFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1105:16787:9771/1
+GTTATTATTATGTCCTACAA
++
+AABCCFFFFFFFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1105:17564:15723/1
+TATGCTCGCCTGTAATATTG
++
+EDCCDFFCEEDCGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1105:18108:12091/1
+TAATAGGATGAGGCAGGAAT
++
+CCCCCFBFFFFFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1105:18331:16683/1
+TCTGGTTCCTACTTCAGGGT
++
+BABA?DFFFFFFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1105:20577:18421/1
+GGGGGTAGCTAAAGTGAACT
++
+ABB@3>AAFFFFFEAGGGFG
+@M01368:8:000000000-A3GHV:1:1105:21099:2895/1
+TAGCTAAAGTGAACTGTATC
++
+CBCBBFFFFFFFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1105:26469:19245/1
+TTATGATTATGTCCTACAAG
++
+BAAAAFFFBFFFGGGGGGFF
+@M01368:8:000000000-A3GHV:1:1105:7169:17145/1
+AACCTAAATAGCCCACACGT
++
+CCCCCFFFFFFFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1106:15481:16176/1
+CTTTAGTAAGTATGTTCGCC
++
+ABBBBFFFFFFFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1106:17389:18671/1
+CCATAACACTTGGGGGTAGC
++
+3>>A@FFFFFFFGGGFEECF
+@M01368:8:000000000-A3GHV:1:1106:22927:3863/1
+GTATCCGACATCTGGTTCCT
++
+A>ABAFA?D@AFGGGGFGGG
+@M01368:8:000000000-A3GHV:1:1106:23625:4236/1
+TAGCTAAAGTGAACTGTATC
++
+@?AAAFFBFBFFFGGFGFGG
+@M01368:8:000000000-A3GHV:1:1106:26031:14826/1
+GATCACAGGTCTATCACCCT
++
+ABBAAFFF@FFFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1106:27607:15990/1
+GACAGATACTGCGACATAGG
++
+BBBBBFFFFFFFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1106:6455:17124/1
+GTATCCGACATCTGGTTCCT
++
+BBBAAFABDBBFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1107:14451:26748/1
+GTATGTTCGCCTGTAATATT
++
+BABBBFFDABBBGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1107:18714:24788/1
+GTATGTTCGCCTGTAATATT
++
+BBBCCFFFDEDEGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1107:21355:8333/1
+ATATTGAACGTAGGTGCGAT
++
+ABCBBFFFFFAFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1107:22864:15712/1
+AATAAGACATCACGATGGAT
++
+BBBBBFBBFFFFGGGGCEGG
+@M01368:8:000000000-A3GHV:1:1107:24817:14233/1
+CTTCAGGGTCATAAAACCTA
++
+3AABABFFBFFFGCFGGGGG
+@M01368:8:000000000-A3GHV:1:1107:24830:14440/1
+AACTGTATCCGACATCTGGT
++
+ABBBA@FFFFBBGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1107:26478:23602/1
+GCTAAAGTGAACTGTATCCG
++
+1AAAAF1B13BBBEGGGFGG
+@M01368:8:000000000-A3GHV:1:1108:11059:23181/1
+GTTATTATTATGTCCTACAA
++
+CCCCCFFFFFFFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1108:12233:13498/1
+TAGGTGCGATAAATAATAGG
++
+BCCBAFFBCCCCGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1108:14328:14751/1
+ATAATAGGATGAGGCAGGAA
++
+BCCCBFFFFFFFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1108:16350:22621/1
+TTAGTAAGTATGTTCGCCTG
++
+AAAACFFFFFFFGGGFGGGG
+@M01368:8:000000000-A3GHV:1:1108:21791:23272/1
+CTTTAGTAAGTATGTTCGCC
++
+3ABBBFFFFF@FGGGGGGGC
+@M01368:8:000000000-A3GHV:1:1108:23314:26089/1
+ATTGAACGTAGGTGCGATAA
++
+BBBBBFFF?FFAGFBFGGEG
+@M01368:8:000000000-A3GHV:1:1108:25084:18127/1
+TTATTATGTCCTACAAGCAT
++
+CCBBCFFFFFFFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1108:7626:10048/1
+ATCAAAGACAGATACTGCGA
++
+CCCCCFFFFFFFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1109:11270:12255/1
+AATCAAAGACAGATACTGCG
++
+CCCCCFFFFFFFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1109:19224:11655/1
+AAATAGCCCACACGTTCCCC
++
+BBB@A4FFFBBBGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1109:21978:9490/1
+GGGTCATAAAACCTAAATAG
++
+?A3AA?DFFFFFGGGGGGGF
+@M01368:8:000000000-A3GHV:1:1109:22910:4079/1
+TAATAGGATGAGGCAGGAAT
++
+CCCCCFFFFFFFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1109:24217:19077/1
+AAAGTGAACTGTATCCGACA
++
+>AAA3BDFFFFDGBFFEEGG
+@M01368:8:000000000-A3GHV:1:1109:25237:11722/1
+CCTGTAATATTGAACGTAGG
++
+AABBBFFFFFBBF5BGGFGA
+@M01368:8:000000000-A3GHV:1:1109:27103:7153/1
+GTAATATTGAACGTAGGTGC
++
+33>A?FFFDFBFGCG4EGFG
+@M01368:8:000000000-A3GHV:1:1109:8763:7859/1
+TAGTAAGTATGTTCGCCTGT
++
+BABAADFFFFFFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1110:12808:18367/1
+AATTAACACACTTTAGTAAG
++
+BBBBBFFFFBBFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1110:14751:26540/1
+TAACACTTGGGGGTAGCTAA
++
+AAA?1CFFFFADGEEGFGB1
+@M01368:8:000000000-A3GHV:1:1110:15519:10008/1
+CTGTAATATTGAACGTAGGT
++
+BBBBBFFFFFFFGGGGGGCB
+@M01368:8:000000000-A3GHV:1:1110:16559:7507/1
+CATTCAATTGTTATTATTAT
++
+ABBBAFFFFFFFFGGGGGGG
+@M01368:8:000000000-A3GHV:1:1110:16700:6843/1
+AAATAATAGGATGAGGCAGG
++
+BBBBBFFFFFFFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1110:18014:7856/1
+ATAAATAATAGGATGAGGCA
++
+AABBBFFFFFFFCGGGCGGG
+@M01368:8:000000000-A3GHV:1:1110:23303:11846/1
+ACTTGGGGGTAGCTAAAGTG
++
+3ABB?FAB?DAAGGGFBGGB
+@M01368:8:000000000-A3GHV:1:1111:13195:14562/1
+ATCAAAGACAGATACTGCGA
++
+ABAAAFFFFFFFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1111:14287:20817/1
+GCCAACACGTTCCCCTTAAA
++
+>>A3>AAAACFFFGFGFGGG
+@M01368:8:000000000-A3GHV:1:1111:23624:14516/1
+GTCCTACAAGCATTAATTAA
++
+3>3AAFFFFFAFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1111:7437:24508/1
+ACACACTTTAGTAAGTATGT
++
+CBCCDCFFFFFFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1111:8665:25542/1
+TCCTACTTCAGGGTCATAAA
++
+AA3AAFFFFFFFGGGFGFFG
+@M01368:8:000000000-A3GHV:1:1111:9655:13916/1
+GGCCCATAACACTTGGGGGT
++
+1>>1AAFFFFFBGGFE1EEE
+@M01368:8:000000000-A3GHV:1:1112:10272:7828/1
+GTATCCGACATCTGGTTCCT
++
+AAABABBBBBBFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1112:9832:16531/1
+CTGTAATATTGAACGTAGGT
++
+AABABFFFFFFFF4GGGGEB
+@M01368:8:000000000-A3GHV:1:1112:9832:6701/1
+CGCCTGTAATATTGAACGTA
++
+AABBBBFFFFFFGGGFGGGG
+@M01368:8:000000000-A3GHV:1:1113:13532:8618/1
+GGAATCAAAGACAGATACTG
++
+AA?AAFFFFFFFGGGGGFBF
+@M01368:8:000000000-A3GHV:1:1113:21679:18011/1
+GATCACAGGTCTATCACCCT
++
+AA>1>11F1D1DDFFFFGGG
+@M01368:8:000000000-A3GHV:1:1113:25528:14016/1
+CCTACAAGCATTAATTAATT
++
+>AAAAFFFBFFFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1113:5741:16959/1
+TAGTAAGTATGTTCGCCTGT
++
+ABBBBFFFFFFFGGGFGGGG
+@M01368:8:000000000-A3GHV:1:1114:10130:11959/1
+CGTTCCCCTTAAATAAGACA
++
+>A33>FFFFFF@FFFGGGGF
+@M01368:8:000000000-A3GHV:1:1114:14540:5315/1
+CTTTAGTAAGTATGTTCGCC
++
+AABCCFFFFFFFGGGGGGGG
+@M01368:8:000000000-A3GHV:1:1114:15066:16302/1
+TAAATAAGACATCACGATGG
++
+BBBBAFFBDFBFBGGGGGFG
+@M01368:8:000000000-A3GHV:1:1114:16639:15258/1
+CCTAAATAGCCCACACGTTC
++
+11>>ABFFFFFFGGCGC1BB
+@M01368:8:000000000-A3GHV:1:1114:2404:13066/1
+TCCTACAAGCATTAATTAAT
++
+CCCCCFFFFCFFGGGGGGGG