diff test-data/sanger_full_range_report_results1.txt @ 16:cd7e644cae1d draft default tip

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/trim_galore commit 276a0ec327f5369c16563696047f0d31577c353f"
author bgruening
date Fri, 08 Oct 2021 09:57:52 +0000
parents 084bbd8ba7b8
children
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--- a/test-data/sanger_full_range_report_results1.txt	Tue Jul 30 06:26:49 2019 -0400
+++ b/test-data/sanger_full_range_report_results1.txt	Fri Oct 08 09:57:52 2021 +0000
@@ -3,21 +3,24 @@
 ==========================
 Input filename: input_1.fastq
 Trimming mode: single-end
-Trim Galore version: 0.6.3
-Cutadapt version: 2.4
-Number of cores used for trimming: 1
+Trim Galore version: 0.6.7
+Cutadapt version: 3.4
+Python version: could not detect
+Number of cores used for trimming: 4
 Quality Phred score cutoff: 20
 Quality encoding type selected: ASCII+33
+Unable to auto-detect most prominent adapter from the first specified file (count Nextera: 0, count smallRNA: 0, count Illumina: 0)
+Defaulting to Illumina universal adapter ( AGATCGGAAGAGC ). Specify -a SEQUENCE to avoid this behavior).
 Adapter sequence: 'AGATCGGAAGAGC' (Illumina TruSeq, Sanger iPCR; default (inconclusive auto-detection))
 Maximum trimming error rate: 0.1 (default)
 Minimum required adapter overlap (stringency): 1 bp
 Minimum required sequence length before a sequence gets removed: 20 bp
 
 
-This is cutadapt 2.4 with Python 3.7.3
-Command line parameters: -j 1 -e 0.1 -q 20 -O 1 -a AGATCGGAAGAGC input_1.fastq
-Processing reads on 1 core in single-end mode ...
-Finished in 0.00 s (1608 us/read; 0.04 M reads/minute).
+This is cutadapt 3.4 with Python 3.9.6
+Command line parameters: -j 4 -e 0.1 -q 20 -O 1 -a AGATCGGAAGAGC input_1.fastq
+Processing reads on 4 cores in single-end mode ...
+Finished in 0.01 s (5282 ┬Ás/read; 0.01 M reads/minute).
 
 === Summary ===
 
@@ -31,10 +34,10 @@
 
 === Adapter 1 ===
 
-Sequence: AGATCGGAAGAGC; Type: regular 3'; Length: 13; Trimmed: 1 times.
+Sequence: AGATCGGAAGAGC; Type: regular 3'; Length: 13; Trimmed: 1 times
 
 No. of allowed errors:
-0-9 bp: 0; 10-13 bp: 1
+1-9 bp: 0; 10-13 bp: 1
 
 Bases preceding removed adapters:
   A: 0.0%