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view test-data/sanger_full_range_report_results2.txt @ 4:2c1f0fe810f7 draft
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author | bgruening |
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date | Wed, 15 Apr 2015 11:32:11 -0400 |
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SUMMARISING RUN PARAMETERS ========================== Input filename: ./input_mate1 Quality Phred score cutoff: 20 Quality encoding type selected: ASCII+33 Adapter sequence: 'AGATCGGAAGAGC' Maximum trimming error rate: 0.1 (default) Minimum required adapter overlap (stringency): 1 bp Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp cutadapt version 1.1 Command line parameters: -f fastq -e 0.1 -q 20 -O 1 -a AGATCGGAAGAGC ./input_mate1 Maximum error rate: 10.00% Processed reads: 100 Trimmed reads: 20 ( 20.0%) Total basepairs: 24894 (0.0 Mbp) Trimmed basepairs: 26 (0.0 Mbp) (0.10% of total) Too short reads: 0 ( 0.0% of processed reads) Too long reads: 0 ( 0.0% of processed reads) Total time: 0.01 s Time per read: 0.05 ms === Adapter 1 === Adapter 'AGATCGGAAGAGC', length 13, was trimmed 20 times. Lengths of removed sequences length count expected 1 16 25.0 2 2 6.2 3 2 1.6 RUN STATISTICS FOR INPUT FILE: ./input_mate1 ============================================= 100 sequences processed in total Sequences removed because they became shorter than the length cutoff of 20 bp: 0 (0.0%)