view test-data/aragorn_tansl-table-1_tmRNA_tRNA.txt @ 2:358f58401cd6 draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/trna_prediction commit cfb19d75629f02e0dea4475c16c016ed5510eb44

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ARAGORN v1.2.36   Dean Laslett
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Please reference the following paper if you use this
program as part of any published research.

Laslett, D. and Canback, B. (2004) ARAGORN, a
program for the detection of transfer RNA and
transfer-messenger RNA genes in nucleotide sequences.
Nucleic Acids Research, 32;11-16.


Searching for tRNA genes with no introns
Searching for tmRNA genes
Assuming circular topology, search wraps around ends
Searching both strands
Using standard genetic code


gi|240255695:23036500-23037000 Arabidopsis thaliana chromosome 3, complete sequence
501 nucleotides in sequence
Mean G+C content = 43.1%
 
1.
 
 
 
               a
             g-c
             g-c
             g+t
             g-c
             a-t
             t-a
             g-c     tt
            t   gtccc  a
     ta    a    !!!!!  g
    a  ctcg     caggg  c
   t   !!!!    a     tt
   g   gagc     c
    gta    g     g
            c-gag
            t-a
            c-g
            g-c
            c-g
           t   t
           t   a
            tgc
 
 
 
    tRNA-Ala(tgc)
    73 bases, %GC = 56.2
    Sequence [381,453]
 


>tRNA-Ala(tgc) [381,453]
ggggatgtagctcatatggtagagcgctcgctttgcatgcgagaggcaca
gggttcgattccctgcatctcca




Number of tmRNA genes = 0


Configuration: aragorn /tmp/tmpx1qAPk/files/000/dataset_3.dat -gc1 -m -t -c -o /tmp/tmpx1qAPk/files/000/dataset_4.dat -fasta