Mercurial > repos > bgruening > uniprot_rest_interface
comparison macros.xml @ 9:468c71dac78a draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/uniprot_rest_interface commit da476148d1c609f5c26e880a3e593f0fa71ff2f6
| author | bgruening |
|---|---|
| date | Wed, 22 May 2024 21:18:15 +0000 |
| parents | af5eccf83605 |
| children |
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| 8:af5eccf83605 | 9:468c71dac78a |
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| 1 <macros> | |
| 2 <token name="@EXECUTABLE@">1.0</token> | |
| 3 <macro name="macro-category_FROM"> | |
| 4 <param name="category_FROM" type="select" label="Choose your database category (FROM):" | |
| 5 help="Select a databse from which your ids are coming from"> | |
| 6 <option value="uniprot">UniProt</option> | |
| 7 <option value="oseqdb">Other sequence databases</option> | |
| 8 <option value="3Dstrdb">3D structure databases</option> | |
| 9 <option value="ppidb">Protein-protein interaction databases</option> | |
| 10 <option value="chemistry">Chemistry</option> | |
| 11 <option value="protfgdb">Protein family/group databases</option> | |
| 12 <option value="polymorphismANDmutation">Polymorphism and mutation databases</option> | |
| 13 <option value="2DgelDB">2D gel databases</option> | |
| 14 <option value="ProtocolsMaterialsDB">Protocols and materials databases</option> | |
| 15 <option value="GenomeAnnotationDB">Genome annotation databases</option> | |
| 16 <option value="OrganismSpecificGeneDB">Organism-specific gene databases</option> | |
| 17 <option value="phylogenomic">Phylogenomic databases</option> | |
| 18 <option value="EnzymePathwayDB">Enzyme and pathway databases</option> | |
| 19 <option value="GeneExpression">Gene expression databases</option> | |
| 20 <option value="other">Other</option> | |
| 21 </param> | |
| 22 </macro> | |
| 23 <macro name="macro-category_TO"> | |
| 24 <param name="category_TO" type="select" label="Choose your database category (TO):" | |
| 25 help="Select a database which will be used for mapping"> | |
| 26 <option value="uniprot">UniProt</option> | |
| 27 <option value="oseqdb">Other sequence databases</option> | |
| 28 <option value="3Dstrdb">3D structure databases</option> | |
| 29 <option value="ppidb">Protein-protein interaction databases</option> | |
| 30 <option value="chemistry">Chemistry</option> | |
| 31 <option value="protfgdb">Protein family/group databases</option> | |
| 32 <option value="polymorphismANDmutation">Polymorphism and mutation databases</option> | |
| 33 <option value="2DgelDB">2D gel databases</option> | |
| 34 <option value="ProtocolsMaterialsDB">Protocols and materials databases</option> | |
| 35 <option value="GenomeAnnotationDB">Genome annotation databases</option> | |
| 36 <option value="OrganismSpecificGeneDB">Organism-specific gene databases</option> | |
| 37 <option value="phylogenomic">Phylogenomic databases</option> | |
| 38 <option value="EnzymePathwayDB">Enzyme and pathway databases</option> | |
| 39 <option value="GeneExpression">Gene expression databases</option> | |
| 40 <option value="other">Other</option> | |
| 41 </param> | |
| 42 </macro> | |
| 43 <macro name="macro-db_uniprot_FROM"> | |
| 44 <param name="db_uniprot_FROM" type="select" label="Choose a database:" | |
| 45 help=""> | |
| 46 <option value="ACC+ID">UniProtKB AC/ID</option> | |
| 47 <option value="ACC">UniProtKB AC</option> | |
| 48 <option value="ID">UniProtKB ID</option> | |
| 49 <option value="UPARC">UniParc</option> | |
| 50 <option value="NF50">UniRef50</option> | |
| 51 <option value="NF90">UniRef90</option> | |
| 52 <option value="NF100">UniRef100</option> | |
| 53 <option value="GENENAME">Gene name</option> | |
| 54 </param> | |
| 55 </macro> | |
| 56 <macro name="macro-db_uniprot_TO"> | |
| 57 <param name="db_uniprot_TO" type="select" label="Choose a database:" | |
| 58 help=""> | |
| 59 <option value="ACC">UniProtKB AC</option> | |
| 60 <option value="ID">UniProtKB ID</option> | |
| 61 <option value="UPARC">UniParc</option> | |
| 62 <option value="NF50">UniRef50</option> | |
| 63 <option value="NF90">UniRef90</option> | |
| 64 <option value="NF100">UniRef100</option> | |
| 65 <option value="GENENAME">Gene name</option> | |
| 66 </param> | |
| 67 </macro> | |
| 68 <macro name="macro-db_oseqdb"> | |
| 69 <param name="db_oseqdb" type="select" label="Choose a database:" | |
| 70 help=""> | |
| 71 <option value="EMBL_ID">EMBL/GenBank/DDBJ</option> | |
| 72 <option value="EMBL">EMBL/GenBank/DDBJ CDS</option> | |
| 73 <option value="PIR">PIR</option> | |
| 74 | |
| 75 <option value="UNIGENE_ID">UniParc</option> | |
| 76 <option value="P_ENTREZGENEID">Entrez Gene (GeneID)</option> | |
| 77 <option value="P_GI">GI number</option> | |
| 78 <option value="P_REFSEQ_AC">RefSeq Protein</option> | |
| 79 <option value="REFSEQ_NT_ID">RefSeq Nucleotide</option> | |
| 80 </param> | |
| 81 </macro> | |
| 82 <macro name="macro-db_3Dstrdb"> | |
| 83 <param name="db_3Dstrdb" type="select" label="Choose a database:" | |
| 84 help=""> | |
| 85 <option value="PDB_ID">PDB</option> | |
| 86 <option value="DISPROT_ID">DisProt</option> | |
| 87 </param> | |
| 88 </macro> | |
| 89 <macro name="macro-db_ppidb"> | |
| 90 <param name="db_ppidb" type="select" label="Choose a database:" | |
| 91 help=""> | |
| 92 <option value="BIOGRID_ID">BioGrid</option> | |
| 93 <option value="DIP_ID">DIP</option> | |
| 94 <option value="MINT_ID">MINT</option> | |
| 95 <option value="STRING_ID">STRING</option> | |
| 96 </param> | |
| 97 </macro> | |
| 98 <macro name="macro-db_chemistry"> | |
| 99 <param name="db_chemistry" type="select" label="Choose a database:" | |
| 100 help=""> | |
| 101 <option value="CHEMBL_ID">ChEMBL</option> | |
| 102 <option value="DrugBank_ID">DrugBank</option> | |
| 103 <option value="GUIDETOPHARMACOLOGY_ID">GuidetoPHARMACOLOGY</option> | |
| 104 </param> | |
| 105 </macro> | |
| 106 <macro name="macro-db_protfgdb"> | |
| 107 <param name="db_protfgdb" type="select" label="Choose a database:" | |
| 108 help=""> | |
| 109 <option value="ALLERGOME_ID">Allergome</option> | |
| 110 <option value="MEROPS_ID">MEROPS</option> | |
| 111 <option value="MYCOCLAP_ID">mycoCLAP</option> | |
| 112 <option value="PEROXIBASE_ID">PeroxiBase</option> | |
| 113 <option value="REBASE_ID">REBASE</option> | |
| 114 <option value="TCDB_ID">TCDB</option> | |
| 115 </param> | |
| 116 </macro> | |
| 117 <macro name="macro-db_polymorphismANDmutation"> | |
| 118 <param name="db_polymorphismANDmutation" type="select" label="Choose a database:" | |
| 119 help=""> | |
| 120 <option value="DMDM_ID">DMDM</option> | |
| 121 </param> | |
| 122 </macro> | |
| 123 <macro name="macro-db_2DgelDB"> | |
| 124 <param name="db_2DgelDB" type="select" label="Choose a database:" | |
| 125 help=""> | |
| 126 <option value="WORLD_2DPAGE_ID">World-2DPAGE</option> | |
| 127 </param> | |
| 128 </macro> | |
| 129 <macro name="macro-db_ProtocolsMaterialsDB"> | |
| 130 <param name="db_ProtocolsMaterialsDB" type="select" label="Choose a database:" | |
| 131 help=""> | |
| 132 <option value="DNASU_ID">DNASU</option> | |
| 133 </param> | |
| 134 </macro> | |
| 135 <macro name="macro-db_GenomeAnnotationDB"> | |
| 136 <param name="db_GenomeAnnotationDB" type="select" label="Choose a database:" | |
| 137 help=""> | |
| 138 <option value="ENSEMBL_ID">Ensembl</option> | |
| 139 <option value="ENSEMBL_PRO_ID">Ensembl Protein</option> | |
| 140 <option value="ENSEMBL_TRS_ID">Ensembl Transcript</option> | |
| 141 <option value="ENSEMBLGENOME_ID">Ensembl Genomes</option> | |
| 142 <option value="ENSEMBLGENOME_PRO_ID">Ensembl Genomes Protein</option> | |
| 143 <option value="ENSEMBLGENOME_TRS_ID">Ensembl Genomes Transcript</option> | |
| 144 <option value="P_ENTREZGENEID">GeneID</option> | |
| 145 <option value="KEGG_ID">KEGG</option> | |
| 146 <option value="PATRIC_ID">PATRIC</option> | |
| 147 <option value="UCSC_ID">UCSC</option> | |
| 148 <option value="VECTORBASE_ID">VectorBase</option> | |
| 149 </param> | |
| 150 </macro> | |
| 151 <macro name="macro-db_OrganismSpecificGeneDB"> | |
| 152 <param name="db_OrganismSpecificGeneDB" type="select" label="Choose a database:" | |
| 153 help=""> | |
| 154 <option value="ARACHNOSERVER_ID">ArachnoServer</option> | |
| 155 <option value="CGD">CGD</option> | |
| 156 <option value="CONOSERVER_ID">ConoServer</option> | |
| 157 <option value="DICTYBASE_ID">dictyBase</option> | |
| 158 <option value="ECHOBASE_ID">EchoBASE</option> | |
| 159 <option value="ECOGENE_ID">EcoGene</option> | |
| 160 <option value="EUHCVDB_ID">euHCVdb</option> | |
| 161 <option value="EUPATHDB_ID">EuPathDB</option> | |
| 162 <option value="FLYBASE_ID">FlyBase</option> | |
| 163 <option value="GENECARDS_ID">GeneCards</option> | |
| 164 <option value="GENEFARM_ID">GeneFarm</option> | |
| 165 <option value="GENOLIST_ID">GenoList</option> | |
| 166 <option value="H_INVDB_ID">H-InvDB</option> | |
| 167 <option value="HGNC_ID">HGNC</option> | |
| 168 <option value="HPA_ID">HPA</option> | |
| 169 <option value="LEGIOLIST_ID">LegioList</option> | |
| 170 <option value="MAIZEGDB_ID">MaizeGDB</option> | |
| 171 <option value="MIM_ID">MIM</option> | |
| 172 <option value="MGI_ID">MGI</option> | |
| 173 <option value="NEXTPROT_ID">neXtProt</option> | |
| 174 <option value="ORPHANET_ID">Orphanet</option> | |
| 175 <option value="PHARMGKB_ID">PharmGKB</option> | |
| 176 <option value="POMBASE_ID">PomBase</option> | |
| 177 <option value="PSEUDOCAP_ID">PseudoCAP</option> | |
| 178 <option value="RGD_ID">RGD</option> | |
| 179 <option value="SGD_ID">SGD</option> | |
| 180 <option value="TAIR_ID">TAIR</option> | |
| 181 <option value="TUBERCULIST_ID">TubercuList</option> | |
| 182 <option value="WORMBASE_ID">WormBase</option> | |
| 183 <option value="WORMBASE_TRS_ID">WormBase Transcript</option> | |
| 184 <option value="WORMBASE_PRO_ID">WormBase Protein</option> | |
| 185 <option value="XENBASE_ID">Xenbase</option> | |
| 186 <option value="ZFIN_ID">ZFIN</option> | |
| 187 </param> | |
| 188 </macro> | |
| 189 <macro name="macro-db_phylogenomic"> | |
| 190 <param name="db_phylogenomic" type="select" label="Choose a database:" | |
| 191 help=""> | |
| 192 <option value="EGGNOG_ID">eggNOG</option> | |
| 193 <option value="GENETREE_ID">GeneTree</option> | |
| 194 <option value="HOGENOM_ID">HOGENOM</option> | |
| 195 <option value="HOVERGEN_ID">HOVERGEN</option> | |
| 196 <option value="KO_ID">KO</option> | |
| 197 <option value="OMA_ID">OMA</option> | |
| 198 <option value="ORTHODB_ID">OrthoDB</option> | |
| 199 <option value="PROTCLUSTDB_ID">ProtClustDB</option> | |
| 200 <option value="TREEFAM_ID">TreeFam</option> | |
| 201 </param> | |
| 202 </macro> | |
| 203 <macro name="macro-db_EnzymePathwayDB"> | |
| 204 <param name="db_EnzymePathwayDB" type="select" label="Choose a database:" | |
| 205 help=""> | |
| 206 <option value="BIOCYC_ID">BioCyc</option> | |
| 207 <option value="REACTOME_ID">Reactome</option> | |
| 208 <option value="UNIPATHWAY_ID">UniPathWay</option> | |
| 209 </param> | |
| 210 </macro> | |
| 211 <macro name="macro-db_GeneExpression"> | |
| 212 <param name="db_GeneExpression" type="select" label="Choose a database:" | |
| 213 help=""> | |
| 214 <option value="CLEANEX_ID">CleanEx</option> | |
| 215 </param> | |
| 216 </macro> | |
| 217 <macro name="macro-db_other"> | |
| 218 <param name="db_other" type="select" label="Choose a database:" | |
| 219 help=""> | |
| 220 <option value="CHITARS_ID">ChiTaRS</option> | |
| 221 <option value="GENOMERNAI_ID">GenomeRNAi</option> | |
| 222 <option value="GENEWIKI_ID">GeneWiki</option> | |
| 223 <option value="NEXTBIO_ID">NextBio</option> | |
| 224 </param> | |
| 225 </macro> | |
| 226 </macros> |